KEGG   Octopus bimaculoides (California two-spot octopus): 106881452
Entry
106881452         CDS       T04127                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
obi  Octopus bimaculoides (California two-spot octopus)
Pathway
obi03040  Spliceosome
obi04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:obi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106881452
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106881452
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:obi03041]
    106881452
   04121 Ubiquitin system [BR:obi04121]
    106881452
   03400 DNA repair and recombination proteins [BR:obi03400]
    106881452
Enzymes [BR:obi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106881452
Spliceosome [BR:obi03041]
 Complex B
  Other components
   Prp19 complex
    106881452
 Complex C
   Prp19-CDC5 complex
    106881452
Ubiquitin system [BR:obi04121]
 Ubiquitin ligases (E3)
  U-box type E3
   106881452
DNA repair and recombination proteins [BR:obi03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    106881452
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 NBCH_WD40 U-box Nup160 eIF2A zf-Nse Cytochrom_D1 ATG16 DUF2961
Other DBs
NCBI-GeneID: 106881452
NCBI-ProteinID: XP_014787323
EnsemblRapid: LOC106881452
UniProt: A0A0L8FT76
Position
6:complement(5670781..5694979)
AA seq 511 aa
MALCCALSNETPEHPCISPVSGHIFERRLLEKYIQENGTDPMNGEKLTTDVLVDIKASPL
IKPRPPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGIVAGPAGYAAPTPQPAYAAEAGPEAAQQPTEGAGMTEEVLQ
KLQDKATLLTAERKKRGKTVPEGLASSEDIRGYRQLASHTGLHSASVPGIVSLDICLRDT
SKIVTGGNDKNAVVFNKDTEQVMAILKGHTKKVTSVIYHPEEDLVFTASPDSSIRVWGIQ
TAQCGQVIRAHEAPVTGLSLHATGDYLLSSSTDTYWAFSDIRTGKVLTKVTDTSSPHPLT
CAQFHPDGLIFGTGTEDYMIKIWDLKEQINVANFPGHMGPITSIAFSENGYYLATAAEDA
VVKLWDLRKLKNFKTIQLDDKYEVRSLCFDQSGSYLAVAGTDVRVYLCKQWQDLAVFNDH
TASATGVRFGHNATFVASASMDRSVKFFGMN
NT seq 1536 nt   +upstreamnt  +downstreamnt
atggcgctttgctgtgcacttagcaatgaaacccctgaacatccttgcatttcaccggta
tcaggtcatatctttgagcgtagacttttggaaaagtacattcaagaaaatggaactgat
ccaatgaatggggaaaagctgacaactgatgttcttgttgatattaaagcttcacctcta
attaaacctcgaccaccttcagctacaagtattccagccattctaaaatctttgcaagat
gaatgggatgctgtcatgttacacagtttcactctacgacaacaattacagacagctaga
caagaattatctcatgctttgtatcagcatgatgctgcctgtcgtgtaatagctcgtctc
acaaaggaagtaactgctgcaagagaagctttggctactctcaaaccccaagcaggtatt
gttgctgggcctgctggttatgctgcaccaacaccacaacctgcttatgcagcagaagca
ggacctgaagctgctcagcagccaacagagggcgctggcatgacagaagaagtccttcag
aagctccaagacaaagccactttgttaacagctgaacgaaagaagagaggtaaaactgtt
cctgaaggtttggcgagctcagaagatattcgtggctacagacaattggcttcacacact
ggtcttcatagtgctagtgttcctggtattgtatcattggacatttgtttgcgagataca
tcgaagatagttacaggtgggaatgacaagaatgctgttgttttcaacaaagatacagaa
caagttatggcaattcttaagggacatacaaagaaagttaccagtgtcatctaccatcca
gaagaagatctggtgtttacagcatctcctgatagcagcatccgtgtttggggcattcag
actgctcagtgtggtcaagtgattcgtgctcacgaagctcctgttactggtctgagtctt
catgctactggagattacttactcagtagttccaccgatacatattgggctttctcagat
attcgaactggtaaagtgttaactaaagtcactgatacatcttctccacaccctctgact
tgtgcacaattccatcctgatggtcttatttttggaactggaactgaggattatatgatt
aaaatctgggatttgaaagaacagatcaatgtagctaacttccctgggcacatgggccca
attaccagtattgcattttctgaaaatggttactaccttgctactgctgctgaagatgct
gttgtgaaactgtgggatttgcgtaaattgaaaaacttcaagactatccaactggacgat
aaatatgaagtacgcagtctttgttttgatcagagtggatcttatcttgctgtggcaggt
actgatgttagggtttacctctgtaaacagtggcaagacttggcagtttttaatgaccac
acagcatcagctactggtgtgcgatttggtcacaatgctacatttgtggcttcagctagt
atggatcgttcagttaaattctttggaatgaattaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (76)   
   KEGG ORTHOLOGY (1)   
   RefGene (71)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (99)   

Download RDF
DBGET integrated database retrieval system