KEGG   Oryza brachyantha (malo sina): 102702327
Entry
102702327         CDS       T02995                                 
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
  KO
K14297  nuclear pore complex protein Nup98-Nup96
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102702327
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obr03019]
    102702327
   03036 Chromosome and associated proteins [BR:obr03036]
    102702327
Messenger RNA biogenesis [BR:obr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     102702327
Chromosome and associated proteins [BR:obr03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    102702327
SSDB
Motif
Pfam: Nucleoporin2 Nup98_GLEBS
Other DBs
NCBI-GeneID: 102702327
NCBI-ProteinID: XP_006644190
Position
1:11955037..11961892
AA seq 592 aa
MMGSSSSWSAPTFGLSRESSSSLFSHGFVGAMGPSSFSSLPIPGFGGAMPAYISKSHEEL
RHEDYQRGDKGGDVLQKIMFNSAPILPMPIPPSVGTPVNLINSSEPAFSLKPQTNFSTPL
SAATTADQRSAELQFSTQNRYYASNLFWSSLAGPQLSFSSAGLQSSTPGLNCTASTSFSH
LFLPTKQLPVGTQSSTLFPTPCVHPPVELQKNATTHCPISQTAPCTEHGGIFFGTSANTF
SAATSSTQPTTSSLGPSSFPATRHGDLFNPYCSRSSHAPSTGFACQENVFSNSAAYTSNV
NSDFPMNTIDLLLPNNIRLVRIRFSSTNDGDRSLPSKVHSVDRHDAKASEVPISLCIYPG
ENQELTIKSMVEPAKSHTGKQSSPPGGSRPDDQSGRIKVCNSADGASSGPGENRKENSGA
GHKTLRSPLAAPHCGVIAESLLPRLYSADYYTVPSIVELAVREREEPGYCSHVKGFTVGR
HGYGSVKFDGETDVRKLDIGSIVEFNEREIIVYRDVSNNTPPAGHELNKAAEVTLLNVKC
VDQKTGLQFTKGLSVDRYKEILVQWTRDHDAEFVSFDAAKGEWKFRVKNFNM
NT seq 1779 nt   +upstreamnt  +downstreamnt
atgatgggctcttcttcatcttggtctgccccaacctttgggttatccagggaatcctct
tcatcattgttttcacatggctttgtgggagcaatgggtccttcttcattctcatctttg
cccatcccaggctttggaggagcaatgccagcatacataagcaaatcgcatgaggagctc
cgacatgaagattatcagagaggcgacaaaggtggtgacgttctgcagaaaattatgttt
aattcagctcctatacttcccatgcccatcccaccgtcagttggaaccccagttaatttg
atcaattcaagtgaacctgctttcagtttgaagccccaaacaaatttcagtactccactt
tcagcagcaacaactgctgatcaacgatctgctgagctacagttctcaacccaaaatcgc
tattatgcttcaaacctattttggagttccttggcaggaccgcagctatcattttcatca
gcagggctgcaatcttctacaccaggtttaaattgtactgccagcacatcattttcccat
ctgttcctgcccacaaagcaactgccggtgggaacccaatcatcaactttatttcctacc
ccttgtgtgcatccacccgtggagttgcaaaagaatgccaccacccactgcccaatttca
cagactgcaccttgtacagaacatggaggaattttctttggcacatctgcaaatacgttc
tcagcagctacatcatctactcagccaaccacttcatcattgggtccaagctcatttcct
gctactcgacatggagatttgttcaatccctattgttcaagatcatctcatgccccttct
actggatttgcatgtcaggagaatgtgttcagcaactctgcggcatatacatctaatgta
aattctgatttccccatgaatactattgatttactacttccaaataacatcaggctggta
aggattagattttcttcaacaaatgatggtgacagaagtcttccttcgaaggttcattct
gttgatcgtcatgatgctaaagcttcagaagtacccatttctttatgtatatatcctgga
gagaaccaagagctgactatcaaatcaatggtggaacctgctaagagtcacactggaaaa
cagtctagtccacctggtggatctcgtccagatgatcaaagtggtcgcatcaaagtgtgc
aacagtgctgatggtgcatcatcgggacctggtgagaatcgaaaggagaatagcggtgct
ggtcacaagacactgaggtcaccactggctgctcctcactgtggagtgatagctgagtct
ctactgcctcgcctgtacagcgctgattactacaccgtgccatctattgtggagcttgcc
gtgagagagcgtgaggagccaggttattgctcgcatgtgaagggcttcactgttggcagg
catggctatggcagtgtaaagtttgatggagaaactgatgtgagaaagctcgatattgga
tccatcgtggagttcaatgaacgcgagattatcgtatacagagatgtgagcaataatact
ccacctgctggacacgaactcaacaaggctgcagaagtcactcttctgaacgtcaagtgc
gtcgatcagaagaccgggctgcagtttacgaaggggctatcagttgacaggtacaaggag
atcttggtgcaatggacaagggaccatgacgcagaatttgtgtcatttgatgcggccaag
ggggagtggaagttcagggttaagaatttcaacatgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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