KEGG   Oryza brachyantha (malo sina): 102716627
Entry
102716627         CDS       T02995                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03040  Spliceosome
obr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102716627
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102716627
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:obr03041]
    102716627
   04121 Ubiquitin system [BR:obr04121]
    102716627
   03400 DNA repair and recombination proteins [BR:obr03400]
    102716627
Enzymes [BR:obr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     102716627
Spliceosome [BR:obr03041]
 Complex B
  Other components
   Prp19 complex
    102716627
 Complex C
   Prp19-CDC5 complex
    102716627
Ubiquitin system [BR:obr04121]
 Ubiquitin ligases (E3)
  U-box type E3
   102716627
DNA repair and recombination proteins [BR:obr03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    102716627
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 U-box NBCH_WD40 zf-Nse PAN2_N V_ATPase_I_N PAS_11
Other DBs
NCBI-GeneID: 102716627
NCBI-ProteinID: XP_006661845
UniProt: J3N396
Position
10:complement(11381221..11387744)
AA seq 527 aa
MICAISGEVPDEPVVSKKSGLLFERRLVERYIEDHGKCPVTKEELTMDDIVPVKTNKVVK
PRPLQAASIPGLLGMFQNEWDALMLSSFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARALLAQAERQIPASMAGAAPTAVVSNGKRAFEDEIGPDGKKIRPGINPVMIDELT
ECNTMLSAHRKKRQVPPTLASIDAIEKHTQISSHPLHKTNKPGILSMDIHPSKDIIATGG
IDTNAVLFDRPSGQILCTLTGHSKKITSLKFVPRDELFVTGSADKTVRIWQGSEEGNYNC
IHTLKDHTAEVEAVTVHATQKYFVTASKDNTWCFYDISTGSCLTQVGEASGEEGYTSASF
HPDGLILGTGTTEAVVKIWDVKTQSNVAKFEGHVGPVTAMSFSENGYFLATAALDGVKLW
DLRKLRNFRTISPYDTDTPTNSVEFDFSGSYLAVGGSDTRVYQVANVKLEWNLVKTLPDL
SGTGRVTNVKFGADAKYIAVGSMDRNLRIFGLPGDDDQMGETIPSEE
NT seq 1584 nt   +upstreamnt  +downstreamnt
atgatctgcgcaatctccggcgaggtgccggatgagccggtggtgtcgaagaagtcgggc
ctgctcttcgagcggaggctcgtcgagcgctacatcgaggaccatgggaagtgcccggtc
acaaaggaggagctcaccatggacgacatcgtgccggtgaagaccaacaaggttgtgaag
cccagacctttgcaggctgcaagcattcctggactcctggggatgttccaaaatgagtgg
gatgctctcatgctttctagttttgctttggagcagcagcttcatacagctagacaagaa
cttagtcatgcgctatatcagcatgatgctgcctgccgtgttatagctagattgaagaag
gaaagagatgaagcgagagcacttttggctcaagctgaaagacaaattcctgcatcaatg
gcaggagctgcacctacagctgttgtctccaacgggaaaagagcatttgaagatgaaatt
ggacctgatgggaagaagattcgtcctggtatcaaccctgtgatgattgatgaactaaca
gagtgcaataccatgctctctgcgcaccgtaagaaacgccaggttcctccaactttggca
tcaattgatgcaattgagaaacatactcagatctccagtcatccacttcacaagacaaac
aaaccaggcattttgtctatggatattcatccttcaaaggacattattgcaaccggtggc
atcgatacaaatgcagtgctttttgacaggccatctggtcaaattttgtgcacacttact
ggtcactcaaagaagataaccagtttgaaatttgttcctcgggatgagctctttgtaact
ggatcggcagataagactgttcgaatttggcaaggaagtgaggagggaaactacaattgc
atccatacattgaaagatcatactgccgaggttgaagctgttacagttcatgcgactcag
aagtactttgtgactgcttccaaggataacacttggtgcttctatgatatttcaacagga
tcgtgcctcacacaggttggtgaggcttcaggagaagagggatatacatctgcatctttc
cacccagatggtcttatcctgggtacagggaccactgaagctgttgtcaaaatttgggat
gtgaagacacagtcaaatgttgcaaagtttgaggggcatgttggaccagtaactgctatg
tccttctctgaaaatggttacttcctagcgactgctgctcttgatggcgtcaaactttgg
gatcttcggaaattaagaaattttaggaccatctctccgtatgacacggacacaccgaca
aattctgtggaatttgattttagtggaagctatctagctgttggtggttcagatacaagg
gtttaccaagtagctaatgttaagctcgagtggaatcttgtcaagaccttacctgattta
tcaggcacagggagagtgaccaatgtcaagtttggcgctgatgcaaagtacatcgccgta
ggttcgatggaccgtaacctacggatattcgggcttcctggagatgatgaccaaatgggc
gagacgataccatcggaagagtga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (25)   

Download RDF
DBGET integrated database retrieval system