KEGG   Oryza brachyantha (malo sina): 102717118
Entry
102717118         CDS       T02995                                 
Name
(RefSeq) terminal nucleotidyltransferase 4B
  KO
K03514  non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102717118
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obr03019]
    102717118
   03016 Transfer RNA biogenesis [BR:obr03016]
    102717118
Enzymes [BR:obr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     102717118
Messenger RNA biogenesis [BR:obr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     102717118
Transfer RNA biogenesis [BR:obr03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    102717118
SSDB
Motif
Pfam: PAP_assoc NTP_transf_2 TUTase PAP_NTPase Polbeta DNA_pol_B_palm LPD29 Nrap_D2
Other DBs
NCBI-GeneID: 102717118
NCBI-ProteinID: XP_006646192
Position
1:20622621..20629693
AA seq 632 aa
MSRKAQPAEPPRGRKGRRKPLPSLAPPNQAGAAAAAATATATATTTTGPAAAAMEAEAGA
AAIVYDALPGFSLAFSPDEEEEEHLGGAAAGPGASASASAAAEEVEDATATYSVFRNEIT
AAGDALVDIPAADFFSLDVSAAVEDEPATPPALSPRPVAEATPSGSLAPAEQPAQGSERA
WFRGGRRFRSPMLQLHKEILDFCEFISPSAEEQSSRTAAVTAVSNVVKHIWPQCKVEVFG
SFRTGLFLPTSDIDVVIFDSRVKTPQVGLYALAKALSQKGVAKKIQVIAKARVPIVKFVE
RKSEIAFDISFDVDGGPQAADFIKDYVKKFPALRHLCMILKVFLHQRELNEVYTGGIGSY
ALLTMLITHLQLVWGGKDILGYRKKEHNLGILLITFFDFYGRKLNNWDVGISCNSARTFF
LKTDKNFANPDRAYLLAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYSVLTDVNLITSLGA
NRSILGTIVRPDSVLLDRKGWNKDDTIADMLTEPWEPLPRQFDSGNDAVYSWHVIDDEPL
PRNNSPSTSEDRNPSPTQKRKSSKAKQKSRKKAKADSSSGNNVENGFKLGKGLAQCDRSH
RSTGSSKRSKGHREYDRFTNTLPQYTQHINRW
NT seq 1899 nt   +upstreamnt  +downstreamnt
atgtctcgcaaggcgcaacccgcggagcctccacgcgggcggaagggcaggaggaaacct
ctcccctccctcgcgccgccgaaccaagcgggggccgccgccgccgccgccaccgccacc
gccaccgccaccacaaccaccggtccagccgcagctgccatggaggctgaagcgggcgcc
gcggccatcgtctacgacgccctcccgggtttcagcctggcgttctcgccggatgaggag
gaggaggagcacctaggcggtgcggctgccggccccggcgcgtcggcctccgcctcggct
gcggcggaggaggtggaggacgccaccgcgacctactccgtgttccgtaacgagatcacg
gctgctggggacgcgctagtcgacatacccgctgcggatttcttctccctcgacgtctcg
gccgcagtcgaagacgagccggccaccccgccggcgttgtcgccgcggcctgtcgcggag
gcaacgccctcgggatccctagcccccgcggagcagccggcgcagggatcggagcgcgcg
tggtttcggggaggcaggcggttcagaagcccaatgctgcagcttcacaaagagattctt
gacttttgtgagtttatttcaccatctgctgaagaacagtcctcacggacagctgctgtg
acagctgtctccaatgttgtcaaacatatatggcctcagtgcaaggtggaagtctttgga
tcttttagaacagggctgtttctaccaacaagtgatatcgacgttgtaatatttgactcc
agggttaagactcctcaagttggcctatatgctcttgcaaaagcattgtctcagaaaggg
gttgctaaaaagatacaggtaatagccaaggcccgtgttccaattgtgaagtttgtggag
agaaaaagtgaaatagcttttgatatcagctttgatgtggatggtggaccgcaagcagcg
gacttcatcaaggattatgtgaagaagtttcctgctttaagacatctgtgtatgattctg
aaagttttcttacatcaaagagagctcaatgaggtctatacaggtggaattggttcatat
gctcttctcactatgctgatcacacatctacagttggtctggggaggcaaagatatactg
gggtatcgtaaaaaggagcacaacttgggaattcttttgatcacattttttgatttttat
ggacgcaagctgaacaattgggatgttggtatatcctgcaactctgcaaggacctttttc
ttgaagactgataaaaactttgcgaatcctgatcgagcataccttctagccattcaggat
cccatggtaccagataatgatattgggaagaattcctttaactatttcaaggtgaaatca
gcattttcaaaggcttattctgtgttaactgatgtgaacttgatcacaagcttgggagcg
aaccggagcattctgggcacaattgtcagaccagactctgtgctcctcgaccggaaaggc
tggaacaaggacgatacaatagctgacatgttaacagaaccctgggaaccattaccccgg
cagtttgacagcggcaacgatgcagtgtacagttggcatgtgatagacgatgaaccacta
cccaggaataatagtccatccacatcggaggacagaaatccatcacctacgcaaaaacgg
aagtcctccaaagcaaaacagaaatcacggaaaaaggccaaggctgattcgtcaagtggt
aacaatgttgaaaatggtttcaagctggggaaaggactagcacaatgtgacagatctcat
cgtagtacaggaagcagcaaacggagcaaaggacatagagagtatgacagatttacaaat
accctcccacagtatacgcagcacattaataggtggtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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