KEGG   Oryza brachyantha (malo sina): 102722007
Entry
102722007         CDS       T02995                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102722007
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obr03019]
    102722007
Messenger RNA biogenesis [BR:obr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102722007
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102722007
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 102722007
NCBI-ProteinID: XP_040379607
Position
4:11459262..11462727
AA seq 128 aa
MSWAGPDEIFLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGEL
YCDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSEAEIRKAEKAEREARDLKGSMRK
RMEFLDFD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcgtgggccgggcccgacgagatcttcctctccacatccctcgccggcttcctggac
aagaaacttattgtcctactacgagatggacggaagctgcttggcacactctgttcattt
gatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagtaattgtaggggaacta
tattgtgatgttcctcttgggctatatgtgatccggggagagaatgttgtattaattgga
gaattggatcgtgagaaggatgaactccctgctcacatgacttgtgtttcagaggctgaa
ataagaaaggctgagaaagcagaaagggaagcaagagatctgaaaggttcaatgaggaag
aggatggagttcttagactttgattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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