KEGG   Afipia carboxidovorans OM5 (Mississippi): OCAR_4156
Entry
OCAR_4156         CDS       T00783                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
oca  Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca03420  Nucleotide excision repair
oca03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    OCAR_4156
   03430 Mismatch repair
    OCAR_4156
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oca03400]
    OCAR_4156
Enzymes [BR:oca01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     OCAR_4156
DNA repair and recombination proteins [BR:oca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     OCAR_4156
   MMR (mismatch excision repair)
    Other MMR factors
     OCAR_4156
SSDB
Motif
Pfam: UvrD-helicase AAA_19 UvrD_C_2 UvrD_C DEAD AAA_16 Viral_helicase1 nSTAND3 ResIII AAA_22 FtsK_SpoIIIE TIP49 AAA_11 RuvB_N AAA_29
Other DBs
NCBI-ProteinID: ACI91305
Position
complement(162926..164629)
AA seq 567 aa
MKIELCEKRKAIIAQQGHLLVLGGPGSGKTTIALFKAQKRFADLKPGQEILFLSFSRAAI
RQVLLRCKEILTPAERRTVTVQTYHAFCMEMLEAHGRLLGGKPIRFLYPGDERLQKSAFE
GDWSVERRRQAAEMGLYSFDLFAAGTAELFERCGALRDLIADRFPMIIVDEFQDTDDNQW
RIVQALSGVTDVFCLADPEQRIFDYRDDIDPRRLEILRETTKVSEFDLGGENHRSPNAGI
LKFADAVLRNQAPLPATPDVKQVAYWPNAFAATAHAAVIWTFSVLRKKGVTNPSVAVLSR
SNALISDLSTILSEPHTYNNQPLPVIEHDVVWDAELSAAAALVVASILEWPTSPANESLV
RTLRLICAYYKLKNAEDPTKAAADHARKYDEAAGKVEKGEAPRINAAKALVTAHANGIDL
IGEPVADWKAARTVLQDVPALAELFREVRLVRLFRATDALASGLGEQWLALGSYAGVSDL
VKRILEQERLIAVERDPQGCVLMNMHKSKGKEFDGVVLVEGAFKSGFFNEREKPPFEPSR
RLLRVGLTRARALVTIVRPQNARPLVD
NT seq 1704 nt   +upstreamnt  +downstreamnt
atgaagatcgaactgtgcgagaagcgcaaggcgatcatcgcacagcagggccacctgctg
gttttgggcggcccgggttccggcaagacgacgatcgcgttgttcaaggcgcagaagcgg
ttcgctgatctgaagccaggccaagagatcttgttcctgagtttctcgcgcgcggcgatc
cgccaagttctcctccgttgcaaggaaatcctgaccccagctgaacggcgcacggtgacc
gtacagacctatcacgccttctgtatggaaatgcttgaggctcacgggcggttactcggc
gggaagcctatccgcttcctctacccaggagatgagcggctgcagaagtcggcgtttgaa
ggcgactggagtgtagagcgtcggcggcaggcggctgagatgggcctctacagcttcgat
ctcttcgcggctggaacggccgagttgttcgagcggtgcggggcgttgcgcgacctcatc
gccgatcgctttccgatgatcatcgtggatgagttccaggacacggacgacaatcagtgg
cggatagtgcaggcgctttccggcgtaaccgacgttttctgccttgccgatcccgagcag
cgcatctttgactatcgcgacgatatcgacccgcgaaggctcgagattctgcgcgagacg
accaaggtctcggaattcgaccttgggggagaaaaccatcgcagtccgaacgccggcatc
ctgaagttcgcggatgcggtgctacgtaatcaagccccgttgccggcaacacccgacgtc
aaacaggtggcctactggccaaacgcgttcgccgccacagcgcatgctgctgtgatctgg
acgttctctgtgctccgcaagaagggcgtgacgaatccgagcgtagcggtgctgtcgcgt
agtaacgcgctgatttccgacctgtcgacgatcctgtccgagccgcatacctacaacaat
cagccgctcccggtcatagagcacgacgtcgtgtgggatgcagagctctccgccgccgcc
gcgcttgtcgttgcatcgatactcgaatggccgacaagcccggccaatgagagcctagtc
cggaccctccggctcatctgcgcctactacaagctgaagaacgctgaggacccaacaaag
gcagcggccgatcacgcgcgcaagtacgacgaggccgcaggaaaggtggagaagggggaa
gcgccgaggatcaatgcagccaaagcgctggtaacagcccatgccaacggcatcgatctg
atcggcgaacccgtagccgactggaaggccgctcgtaccgttctgcaggatgttcccgcg
ctggccgaactgttccgcgaggtgcggttggttcgcctcttcagggcgaccgacgcgctt
gcctctggcttgggcgagcaatggttggctttgggcagctacgccggtgtgagcgatctc
gtgaagcgcattctcgagcaagagcggctcatcgctgtggagcgcgacccccaagggtgc
gtgctgatgaatatgcacaaatccaagggcaaagaatttgacggcgtcgttctcgtcgaa
ggcgcgttcaagtccggcttcttcaacgaacgtgagaagccgcctttcgagccgagccgg
cggctgctgcgtgttggtctgacgcgcgccagggccctagtgacgatcgtacggccacaa
aacgcgcggccactggtcgactag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (33)   

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