KEGG   Oceanimonas sp. GK1: GU3_06735
Entry
GU3_06735         CDS       T01667                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
oce  Oceanimonas sp. GK1
Pathway
oce03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oce00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GU3_06735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oce03019]
    GU3_06735
   03009 Ribosome biogenesis [BR:oce03009]
    GU3_06735
Enzymes [BR:oce01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     GU3_06735
Messenger RNA biogenesis [BR:oce03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     GU3_06735
Ribosome biogenesis [BR:oce03009]
 Prokaryotic type
  rRNA helicases
   GU3_06735
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_30 AAA_19
Other DBs
NCBI-ProteinID: AEY01103
UniProt: H2G183
Position
1458104..1459894
AA seq 596 aa
MTNTSVVPAFADLGLAPAVLQALTDAGYEQPSAIQAAAIPTLLTGRDVLGLAQTGTGKTA
AFALPMLSRISGGNAYPQVLVLAPTRELAIQVAESFENYAKYQKDIRIVSIYGGQAYDSQ
IRALKRGVDIVVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTP
DTRQIALFSATMPPAIQRVAQKYLKDPQEVRIANKTRTNASIRQRYWFVRGMPKQEALCR
LVETENMDACLVFVRTRKDAEELAELMSREGHACEALHGDIPQKLREKVVDRLKNGRLNV
LVATDVVARGLDVERISHVINYDMPHDNESYVHRIGRTGRAGREGDAILFVTGREKRSLY
NLERHTRQPIEEMSMPSADDINKIRAERFKARIRTSVEADEKALAPFVEMVNELQADGMD
TAALAAGLARLLQGERPLFVEDKPMAARRPDVRESRERFERSDRPERGERPRRGGKDEVS
GVTMETFRVDVGRVHGVKPGHLVGAIANEADLESRYIGQIQIHDDFSTVDLPEGIPAELQ
QVLQKVRVCQRPLNLAKYEGGPLPRRQFRSKDERGGDRGGERGKFRPRRNDKRLNG
NT seq 1791 nt   +upstreamnt  +downstreamnt
atgacaaatacctctgtagtacccgcttttgctgatctcgggctggcgcctgccgttctt
caagctctgaccgacgccggttatgagcagccttctgccattcaggccgccgccattccg
actctgctgaccgggcgcgacgtactgggcctggcccagaccggtaccggcaagaccgcc
gcctttgccctgccgatgctgagccgcatcagcggcggcaacgcctacccccaggtgctg
gtgctggccccgacccgggagctggccattcaggtggccgagtcctttgaaaactacgcc
aaatatcagaaagacattcgcatcgtctccatctacggtggccaggcttacgacagccag
atccgtgcgctgaagcgcggtgtcgacatcgttgtgggcaccccgggccgagtgatggac
cacatgcgccgcggtaccctcaagctggacagcctgcaggcgctggtgctggacgaagcc
gacgaaatgctgcgcatgggctttattgacgacgtggaatggatcctggagcacaccccg
gacacccgtcagattgccctgttctccgccaccatgccgccggccattcagcgagtggcc
cagaagtacctgaaagatcctcaggaagtgcgcatcgccaacaagacccgtaccaacgcc
agcattcgccagcgttactggtttgtgcgcggcatgcccaagcaggaagccctgtgccgc
ttggtggaaaccgagaacatggacgcctgcctggtgtttgtgcgcacccgtaaagacgcc
gaagagctggccgagctgatgagccgggaaggccacgcctgtgaggccctgcacggtgat
attccccagaagctgcgggaaaaagtggttgatcgtctgaaaaatggccgcctgaacgtg
ctggtggccaccgacgtggttgcccgtggtctggacgtggagcgcatcagccacgtgatc
aactacgacatgccccatgacaacgagtcttacgtgcaccgtatcggccgtaccggccgt
gccggccgcgaaggcgatgccatcctgtttgtgaccggccgtgaaaagcgcagcctgtac
aacctggagcgccacactcgtcagcccattgaagagatgagcatgcccagcgccgacgac
atcaacaagatccgtgccgagcgcttcaaggcccgcattcgcaccagcgttgaagccgac
gaaaaggccctggcgcccttcgtggaaatggtgaacgagctgcaggccgatggtatggat
accgccgccctggccgccggcctggcccgtctgctgcaaggcgagcgcccgttgtttgtg
gaagacaaaccgatggcggcccgtcgtccggatgtgcgtgaaagccgcgagcgctttgaa
cgcagcgaccgccccgagcgcggcgagcgcccgcgtcgtggtggcaaggacgaggtgtcc
ggtgtgaccatggaaaccttccgcgttgacgtgggccgggtgcacggcgtcaagccgggc
cacctggtgggcgccatcgccaacgaggcggatctggagtcccgttatatcggccagatc
cagatccatgatgacttctccaccgtggatctgcccgagggcattcccgccgagctgcag
caggtactgcaaaaggtacgggtctgtcagcgtccgctgaacctggccaagtacgaaggt
ggtccgctgccccgtcgccagttccgtagcaaggacgagcgcggtggcgaccgtggtggc
gagcgcggcaagtttcgcccccgtcgcaacgacaagcgcctgaacggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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