KEGG T01617: OCA5

Oligotropha carboxidovorans OM5 (Goettingen): OCA5_c11710

Entry

OCA5_c11710 CDS T01617

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

ocg Oligotropha carboxidovorans OM5 (Goettingen)

Pathway

ocg03410	Base excision repair
ocg03420	Nucleotide excision repair
ocg03430	Mismatch repair
ocg03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:ocg03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:ocg03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:ocg03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:ocg03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S

Other DBs

NCBI-GI:

337740402

NCBI-GeneID:

10846303

UniProt:

B6JFK1

Position

complement(1249152..1251821)

AA seq 889 aa
MTRKKLSVYQTKRDFTKTAEPSGAAKVTRGKLPRFVIQKHDATRLHYDLRLEIDGIFKSW
AVTRGPSLDPKDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGFWHSDDPAGGL
KKGDLKFTLEGKKLHGEWVLVRMRHDRTGGKRTNWLLIKHRDEAAREGEDILDQDRSVAS
GRTMEQIAQGKGRGPTPFMTAKGNAKPSRSKADRVWQSNQGTAAALRAKSVAKTKTLAKP
VQAAVRKVDHLPEFIAPQLCKSVARPSDGADWIHEIKFDGYRMQLHIQGGKVHLRTRKGL
DWTDKFPAIAKAAAKLPECIIDGEIVALDHEGHPSFASLQAALSDGDTDELIFFAFDLLF
DKDSDLRRLPLTERKARLEQLLDRQSKTSVIRYVAHFDTGGDAVLKSACRLALEGIISKR
RDALYHSGRTESWTKAKCRAGHEVVIGGWKTTAGKFRSLMVGVPHEDHLAYVGIVGTGYG
QAVVKRIMPELKKVASTTNPFGGKNAPRKTTGVHWVKPELVAEIEFAGWTGDNMVRQAAF
KGLRKDKSADEVQVDEPVVTPIAEPAPRKTNTKANTKTRAKAATRTSSSGNAVVMGLTIS
KPDKPLWPDDGKGEPVTKLDLARYMETMGEYLLPHIEGRPCSIIRAPDGIEGEKFFQRHA
TAGMSNLIDQVRVSGDRKPYIQIDRIEGLVAAAQIGGVEFHPWNCAPNEPDVPGRLVFDL
DPAPGVNFTDVITAARDLHDRLSSLGLESFCKTTGGKGLHVVTPLKDAKKDRIDWKAAKA
FAQAVCQAMAADAPERYLINMSKKKREGKIFLDYLRNDRMSTAVAPFSPRGRDFAPVAWP
ITWAQARTGLDPLKFTLRTVPALVKTSKAWAGYDRAARSLKDAIRKMGG

NT seq 2670 nt +upstreamnt +downstreamnt
gtgacccgtaaaaagctctccgtctaccagaccaaacgcgacttcacgaaaaccgcggag
ccctccggcgctgcaaaagttacgcgtggaaagttgccgcgtttcgtcatccagaagcac
gatgcgacgcgactgcattacgatcttcggctcgaaatcgacggcatcttcaaatcatgg
gcggtgacgcgcggcccctcgcttgatccgaaggacaagcgcctcgccgtcgaggtcgag
gatcatccgctcgactacggcgatttcgagggcacgattccgaaaggccagtatggcggc
ggcacagtgatgctgtgggaccgcggcttctggcacagcgacgatcccgcaggcggccta
aagaagggcgatctcaaattcacgctggagggcaagaagctgcacggcgagtgggtgctg
gtgcggatgcgccatgaccgcaccggtggcaaacgcaccaactggcttctcatcaagcat
cgcgacgaggccgcgcgcgagggcgaggacattctcgatcaggatcgctcggtcgcatcc
ggccgcacgatggagcagatcgcgcaaggcaagggccgcgggccgacgccgttcatgacg
gcgaagggaaacgcaaagccaagccgctccaaagccgaccgcgtctggcaatcgaaccag
ggcacagcggcggcattgcgcgcgaaatcggtggcaaaaacgaagacgctggcaaagcca
gtgcaggcagccgtgcgcaaggtcgatcacctgccggaattcatcgcaccgcaactgtgc
aagtccgttgcccgcccgtccgatggcgcggactggattcacgaaatcaagttcgatggc
taccggatgcagttgcacatccaaggcggcaaggtgcacttgcgcacgcgcaagggcctc
gactggaccgataagtttccggctatcgccaaggcggccgccaagctgccggagtgcatc
atcgatggcgagatcgttgcactcgaccacgaggggcacccgagcttcgcctcgctgcag
gcggcgctatctgatggcgacaccgatgaactgatcttcttcgcgttcgaccttttgttc
gataaagacagcgacctgcgccgcctgccgctcaccgagcgcaaagcgcggctggaacag
ttgctcgaccgccagagcaaaaccagcgtcatccgttatgtcgcgcatttcgacaccggc
ggcgacgcggtgttgaagtcggcctgccgtctcgcgctcgaaggcatcatctccaagcgg
cgcgacgcgctctatcattccggtcgcaccgaaagctggacaaaagcaaagtgtcgcgcg
gggcacgaggttgtcatcggcggctggaaaaccaccgcgggcaaattccgctcgctgatg
gtcggcgtgccgcatgaggatcatctcgcttatgtcggcatcgtcggcaccggttacggt
caggccgtcgttaaacggattatgccggagttgaagaaggtggcttcgacgacaaatccg
ttcggcggcaagaacgcgccgcggaaaacgacgggcgtgcactgggtcaaacccgagctt
gtcgccgagatcgagttcgccggctggaccggtgacaacatggtgcggcaggccgcgttc
aaaggcctgcgcaaggataagtcggcagacgaagtgcaggtcgacgaaccggtcgtcacg
cccatcgccgaacccgcaccacgcaagaccaacaccaaggccaatacgaagactcgcgcg
aaagctgccacacgcacgtcctcctccggcaacgccgtggtgatgggcctcaccatttcc
aaaccggacaaaccgctctggccggacgatggcaaaggcgagccggtcaccaagctcgat
ctcgcccgctacatggagaccatgggcgaatatctgctcccgcacatcgaagggcggccc
tgctccatcatccgcgcgccggatggcatcgagggcgagaagttttttcagcgtcacgcc
acggccgggatgtcgaacctgatcgatcaggttcgcgtctccggcgaccgcaagccttac
atccagatcgatcggatcgaagggcttgtggcggcggcgcagatcggcggtgtcgaattc
catccgtggaattgcgcgccgaacgaacccgatgtgccgggccgtctggtgttcgatctc
gatcccgcgccgggcgtcaactttaccgatgtcatcaccgccgcgcgcgatctgcatgat
cggttgtcgtcgctcggactcgagagcttctgcaagaccaccggcggcaagggcctgcat
gtggtcacgccgttgaaggatgcgaagaaggatcgcatcgactggaaagcggcgaaggcc
tttgcacaggcggtctgtcaggcgatggcggcggatgcgccggagcgctatctcatcaac
atgtcgaagaagaaacgcgagggcaaaatcttcctcgactatctgcgcaacgaccgcatg
tcgacggcggtcgcgccgttctcgccgcgcgggcgcgacttcgctccggtggcatggccg
atcacctgggctcaggcgcgcacgggcctcgatccgctgaagttcacgctacgcaccgta
cccgcgctggtgaagacatcgaaggcgtgggccggttacgaccgcgccgcgcgctcgctg
aaagatgcgatccggaaaatgggtggctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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