KEGG T01617: OCA5

Oligotropha carboxidovorans OM5 (Goettingen): OCA5_c28260

Entry

OCA5_c28260 CDS T01617

Gene name

rpoD2

Definition

RNA polymerase sigma factor RpoD

Orthology

K03086

RNA polymerase primary sigma factor

Organism

ocg Oligotropha carboxidovorans OM5 (Goettingen)

Class

SSDB

Motif

Pfam:

Sigma70_r3 Sigma70_ner Sigma70_r1_1 Sigma70_r2 Sigma70_r4 Sigma70_r1_2

Other DBs

NCBI-GI:

337742031

NCBI-GeneID:

10847957

UniProt:

B6JC58

Position

complement(3008949..3011075)

AA seq 708 aa
MATKAKTVAVKDKEKEQKAAETPEKDSADAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQL
NEVLPSDTTSPEQIEDIMAMLSDMGINVSESDEADNEEEEKDEADDDTDNELVEVTSKAV
TETKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQ
AIIIWRDELNEGKIFLRDIIDLEATYAGPEGKGGVNTAMIAGPSGPDGQPTNAIVNGDGT
VQVMPAQAAAAQTAPQTATPFRPAPAAGDDASASEGEGDEDDEFENQMSLAAIEAELKPR
VVETFDKIASEYKKLRRLQEQDIANQLQSESLSPSQERKYKKLKDEIIVEVKSLRLNQAR
IDSLVEQLYDINKRLVSYEGRLFRLGDSHGVSREDFLKNYVGSELDPRWLNRVSKLSAKG
WKNFVAHEKDKIKDLRHEVQQLAALTGLEIGEFRKIVLGVQKGEREARQAKKEMVEANLR
LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD
QARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPL
SLETPVGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGI
GMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN

NT seq 2127 nt +upstreamnt +downstreamnt
atggccaccaaggcgaagacggtagcggtcaaggataaggaaaaagaacagaaggctgcc
gagacgcccgaaaaggattccgccgacgcgccgtcgcccttgctcgatctctccgacgcc
gccgtcaagaagatgatcaagcaggcgaagaagcgcggcttcgtcaccttcgaccagctc
aacgaagtgctgccctccgacacgacctcgcccgagcagatcgaggacatcatggcgatg
ctctccgacatgggcatcaacgtctccgagtccgacgaagccgacaacgaggaagaagag
aaggacgaggctgacgacgacaccgacaacgagcttgtcgaggtcacctccaaggccgtc
accgaaaccaagaagtccgagcccggcgagcgcaccgacgatcccgtccgcatgtatctg
cgcgagatgggcacggtggaattgctgtcgcgcgaaggtgaaatcgcgatcgccaagcgc
atcgaggccggccgcgaagcaatgatcgcggggctgtgcgaaagcccgctgaccttccaa
gcgatcatcatctggcgcgacgaactcaacgaaggcaagattttcctgcgcgacatcatt
gatctcgaggcgacctatgcgggtcccgagggcaagggcggcgtcaacaccgccatgatc
gcgggcccgtccggcccggacggtcagccgaccaacgccatcgtcaacggcgacggcacc
gtgcaggtgatgcccgcgcaggcggccgccgcgcagaccgcgccgcagaccgcgaccccg
ttccgcccggcgccggctgccggcgatgacgcctccgcctccgaaggcgagggggacgag
gacgatgagttcgagaaccagatgtcgctcgccgcgatcgaggctgaactgaagccgcgc
gtggtcgagaccttcgacaagatcgcatccgagtacaagaagctgcgtcgcctgcaggag
caggacatcgccaaccagctgcagagcgagtcgctctcgccgtcgcaggagcgcaagtac
aagaagctgaaggacgagatcatcgtcgaggtgaagtcgctgcggctgaatcaggcgcgc
atcgacagtcttgtcgagcagctctacgacatcaacaagcgcctcgtgtcctatgaggga
cgcctgttccgcctcggcgacagccacggcgtgagccgcgaggacttcctgaagaactat
gtcggctccgagctcgacccgcgctggctcaaccgcgtctcgaaactctcggccaagggc
tggaagaatttcgtcgcgcacgagaaggacaagatcaaggatctgcgccacgaggtgcag
cagcttgcggcgctgacgggcctcgagatcggcgaattccgcaagatcgtgctcggcgtg
cagaagggcgagcgcgaggcgcggcaggcgaagaaggaaatggtggaggcgaaccttcgc
ctcgtcatctccatcgccaagaaatacaccaaccgcggcctgcagttcctcgatctcatt
caggaaggcaacatcggcctgatgaaggcggtcgacaagttcgagtatcgccgcggctac
aaattctcgacctacgcgacgtggtggatccggcaggcgatcacccgcagcattgcagac
caggcgcgcaccattcgtattccggtgcacatgatagagacgatcaacaagatcgtgcgc
acctcgcgccagatgctgaacgagatcggccgcgagccgacgccggaagagctggccgaa
aagctcggcatgccgctcgagaaggtgcgcaaggttctcaagatcgccaaggagccgctg
tcgctcgagacgccggtgggcgacgaggaagactcacacctcggcgatttcatcgaggac
aagaacgcgatcctgccgatcgacgcggcgatccagtcgaacctgcgcgagaccacgacg
cgcgtgctcgcctcgctcacgccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatc
ggcatgaacaccgaccacacgctcgaagaagtcggccagcagttctcggtgacgcgcgaa
cgcatccgccagatcgaggcgaaggcactgcgcaagctgaagcatccgtcgcggtcgcgg
aagctgcggagctttttggataactga

All links

Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (13)   

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