KEGG   Ochrobactrum quorumnocens: CES85_3914
Entry
CES85_3914        CDS       T05040                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
och  Ochrobactrum quorumnocens
Brite
KEGG Orthology (KO) [BR:och00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:och03032]
    CES85_3914 (topA)
   03400 DNA repair and recombination proteins [BR:och03400]
    CES85_3914 (topA)
Enzymes [BR:och01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CES85_3914 (topA)
DNA replication proteins [BR:och03032]
 Prokaryotic type
  DNA Topoisomerases
   CES85_3914 (topA)
DNA repair and recombination proteins [BR:och03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CES85_3914 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom Peptidase_M35
Other DBs
NCBI-ProteinID: ASV83138
UniProt: A0A248U8W2
Position
2:complement(96420..99062)
AA seq 880 aa
MNVVVVESPAKAKTINKYLGSNYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAK
RLADIVKALKDADGLFLATDPDREGEAISWHVLEVLNQKKALKGKTVKRVAFNAITKKAV
LDAIANPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
ESEIERFIREEYWNIAALLKTPRNDNFTARLTAVDGKRLGKLDIKNEEQASAIRTMLEGA
SFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDIGGETTGL
ITYMRTDGVQMAPEAITAARDAIGKSFGPNYVPEKPRYYASKAKNAQEAHEAIRPTDFMR
HPKEVRRYLDEDQARLYELIWKRAIASQMQAADIERTTADIEALNGSKSAMLRANGSVTK
FDGFLAAYTDHREEEDEDEDSAKLPEIRSGEAIAREKIDATQHSTEPPPRYSEASLIKKM
EELGIGRPSTYAATLATLRDREYITIDKRKLTPDPKGRLVTSFLESFFKRYVEYDFTADL
EEKLDLISDGKLSWKDVLRDFWRDFSGSVDDIKELRVTNVLDALNEELAPLAFPDRGDGS
DPRTCPTCGTGQLSLKLGKYGAFVGCSNYPECKFTRQLGGEGSGDAAASDEPKSLGKDPF
TGEEITARTGRFGPYIQRGEGKEAKRASLPKGWSVDTLDHEKAIALLSLPRDVGQHPETG
KMISAGIGRYGPYVSHDGTFANLENADEVFSVGLNRAVAVLADKQSKGAGRGRSTPAALA
TLGDHPDGGSITVRDGRYGPYVNWGKVNATLPKGKDPASVTLEEALALITEKAGSTKPKK
APARKAASKSATAEKKTTTKKTAAKKPAAKSKSKAKAAEE
NT seq 2643 nt   +upstreamnt  +downstreamnt
atgaacgttgtcgttgtcgaatcgcctgccaaggccaaaactatcaacaaatatctcggc
tcgaactataaggttctggcttcgtttggtcatgtgcgagatctgccagctaaggatggc
tccgtccgcccggacgaagattttgccatgtcctgggaagtggacagcaattccgccaag
cgtctggcagatattgtcaaagcgttgaaggacgccgatggcctgtttctggcaactgac
cctgatcgcgaaggggaagccatttcatggcatgtgctggaagttctcaatcaaaagaaa
gctctcaagggcaaaacggtaaagcgcgttgcattcaacgcaatcaccaagaaggctgtc
cttgatgctatcgccaatccgcgtgacatcgacgagcctctggttgacgcctatctggct
cgccgtgctctcgattatctggtcggctttaccttgtcgccggtcctgtggcgcaaattg
ccaggtgctcgttcggctggccgcgttcagtcggtagcccttcgtctggtctgtgatcgc
gagtccgagatcgagcgcttcattcgtgaagaatactggaacattgccgcgcttttaaaa
acgccacgcaatgataacttcacggcacgcctaaccgctgtcgatggtaagcgtcttggc
aagctcgatatcaagaatgaagagcaggcaagcgcgatccgaaccatgcttgaaggcgca
agcttcaaggcagtctcggtcgaggcaaagccaaccaagcgcaatcctgggcctccattc
accacatcgaccttgcaacaggcagcgtccggtcagctcggcttctctgcttcgcgcacc
atgcaggtggcgcagcgcctttatgaaggcgtagacattggcggcgaaaccaccggtctc
atcacctatatgcgaactgacggtgtgcaaatggcgcccgaagcgatcactgcagcgcgt
gatgcgatcggcaaaagcttcggcccgaactacgtaccggaaaagccacgctattatgcc
agcaaggcgaagaacgcacaggaagcgcacgaagcaatccgcccgactgacttcatgcgc
caccccaaagaagtgcgccgctatctagatgaagatcaggcgcgtctttacgagctgatc
tggaagcgtgctatcgcaagccagatgcaggctgccgacattgaacgcacgacagcagac
atcgaggccttgaacggctcgaagtcggcaatgctgcgcgccaatggttcggtcaccaag
ttcgacggattcctagctgcctatacagatcatcgcgaggaagaggacgaggatgaagac
agcgcaaagctgccggaaatccgctctggtgaagcgattgcgcgtgaaaagatcgacgcc
acgcagcactccacagaaccaccgccgcgctattccgaagcctctctcatcaagaaaatg
gaggagctcggcattggccgtccttcgacctatgcggcgacactcgccaccttgcgcgat
cgggaatatattaccatcgacaagcgcaagctgacgccagacccgaaaggccgtctggta
acatcgttccttgaaagcttcttcaagcgctatgtcgaatatgatttcacggccgatctg
gaagaaaagctcgatctgatttccgacggcaagctgtcgtggaaagacgtgctgcgcgat
ttctggcgtgatttctccggctctgtcgacgacatcaaggaactgcgtgttaccaatgtt
ctcgacgcgctcaacgaagaactggcaccgcttgccttcccggatcgcggcgatggcagc
gatccacgcacctgcccaacttgtggaacaggtcaactctcgctgaagctcggcaaatat
ggcgcattcgtcggctgctccaattatcccgaatgcaagttcactcgtcagctcggtggt
gagggaagtggcgatgctgcggcttctgatgaaccaaagtcactcggcaaagatcctttc
accggcgaagaaatcactgcccgcaccggacgtttcggaccttatatccagcgcggcgaa
ggcaaggaagccaagcgcgcgagtctgccgaaaggctggtcggtcgatacgcttgatcat
gaaaaggcgattgcccttctgtcgctgccacgcgatgtcggacagcaccctgaaaccggc
aaaatgatttcagccggcattggacgctatggtccttatgtcagccatgacggtacgttc
gcgaacctcgaaaatgctgacgaagttttctcggtcggccttaaccgtgcggttgctgtg
cttgccgacaaacaatccaagggtgctggtcgcgggcgttccacacctgcagcgcttgca
acgcttggcgatcatcctgatggtggttcaatcaccgtccgtgatggccgctatggtccg
tatgtcaactggggcaaagtcaatgctaccctgccaaagggcaaagacccggcaagtgtg
acgcttgaagaagcgctcgccctgattacggaaaaagctggcagcacgaagcccaaaaag
gctccggcacgtaaagccgccagcaagtcagcgactgctgaaaagaagacaacaacgaaa
aagaccgccgcaaagaagcccgctgctaaatcaaaaagcaaggcgaaagcggcagaggag
taa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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