KEGG   Afipia carboxidovorans OM4: OCA4_c20690
Entry
OCA4_c20690       CDS       T01967                                 
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
oco  Afipia carboxidovorans OM4
Pathway
oco03030  DNA replication
oco03430  Mismatch repair
oco03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:oco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OCA4_c20690 (dnaE1)
   03430 Mismatch repair
    OCA4_c20690 (dnaE1)
   03440 Homologous recombination
    OCA4_c20690 (dnaE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oco03032]
    OCA4_c20690 (dnaE1)
   03400 DNA repair and recombination proteins [BR:oco03400]
    OCA4_c20690 (dnaE1)
Enzymes [BR:oco01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     OCA4_c20690 (dnaE1)
DNA replication proteins [BR:oco03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     OCA4_c20690 (dnaE1)
DNA repair and recombination proteins [BR:oco03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     OCA4_c20690 (dnaE1)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DUF655 HHH_3 DUF6282 HROB Amidohydro_1
Other DBs
NCBI-ProteinID: AEI03200
Position
complement(2255646..2259119)
AA seq 1157 aa
MASPGFIHLHVHSAYSLLQGSMKTEKLAALAKADNQPALALTDRDNMFGALEFSEKLAGL
GIQPIIGCALAVDFGDVDPAARNAAALAPARIVLLAPTEDSYRSLMRLNSRAFLEMPAQQ
TPHIKAEWLEQERTGLIALTGGPEGPISQALMAEHPELALQRVEKLADLFGDRLYLELQR
HGLDSERRIESALIDIAYGKGLPLVATNEPYFATVEDYESHDALLCIAGGRLLAETERAH
LTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAFRPRKRKPILPHFTVDSDHMADAVS
KENAELQKQAEEGLARRLKAHGLAEGKTEEDYRTRLAYEMSVITRMNYSGYFLIVSDFIK
WAKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRFALLFERFLNPERVSMPDFDIDFCQD
RRGEVIDYVQRRYGADHVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAA
PVTLAKAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVP
LYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQSNIHVDLAHLPLD
DKQTYDMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCAR
KHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRAE
MEKQRVRFVSGSVEHSISKSQADQIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAHYP
VEFIAASMTLDTGNTDKLSEFRAEAQRLGIKVEPPSINRSEGTFTVGENTIFYSLAALKG
VGTHAVDMIVEARKNGGPFTSLSDFAARVPPRAINKRVLESLAAAGAFDTIEPNRAAVFA
GADAILAACQRSHEEAVLGQSDMFGGQTGGPVITLPHVEPWLPAERLQREYGAVGFFLSG
HPLDDYKVVLQRLNVQSWAEFASAVKNGRTAGKVAATVVSRMERRTKTGNKMGIIGLSDP
TGHFEAVLFSEGLGQFRELLEPGLAVLLQLSAELQGEDVRARIANVELLDQAAAKTSMAL
KIFLRDDKPLESIRRRLEDHARGGGAGSSARAGEVTLVMMLDLETEVEMRLRDRYKVSPQ
IAGALKAITGVVDVQTL
NT seq 3474 nt   +upstreamnt  +downstreamnt
atggcgtctcccggatttatccatcttcacgttcactcggcctattcgctgctgcagggc
tcgatgaagaccgagaagctcgcggctctcgccaaggccgacaaccagcccgcgttggcg
ctgaccgaccgcgacaatatgttcggcgcgctggaattctccgagaagcttgcgggcctc
ggcatccagccgatcatcggctgcgcgcttgcggtcgatttcggcgacgtcgatcccgcc
gcgcgcaatgcggccgccctcgcgcccgcccggatcgtcctgctcgcgccgaccgaggac
agctatcgcagcctgatgcggctcaactcgcgcgcgttcctcgaaatgcctgcccagcag
acgcctcacatcaaggccgagtggctggagcaggaaaggaccggcctgatcgcgctgacc
ggcggaccggaggggccgatctcgcaggcgctcatggccgagcatcccgaacttgctctc
cagcgggtggaaaagctcgcggacctgttcggcgaccggctttatctcgaactgcagcgc
cacggcctcgacagcgaacggcggatcgagagcgcgctgatcgacatcgcctatggcaag
gggctgccgctcgttgcgaccaacgagccgtatttcgcgaccgtcgaggattacgaatcc
cacgacgcgctgctgtgcatcgcgggcgggcggcttctcgcggagaccgagcgcgcgcac
ctcacgcccgatcatcgcttcaagactcgcgccgagatggcggtgctgttcgccgacctg
ccggaagcgctcgcctcgacggtcgagatcgcgcagcgctgcgccttccgtccgcgtaag
cgcaaaccgatcctgccgcacttcaccgtcgacagcgatcacatggccgatgcggtcagc
aaggaaaacgccgagcttcagaagcaggcggaggaaggtctcgcacggcggctcaaggcg
cacggcctcgccgagggcaagactgaagaagactaccgcacgcgccttgcctacgagatg
agcgtcatcacccgcatgaattattcgggttacttcctcatcgtgtccgacttcatcaag
tgggcgaagtcgcaaggcattccggtggggccggggcgcggctcgggcgcaggctcgctc
gtggcctacgcgctcaccatcaccgatctcgatccgctgcggttcgcgcttctgttcgaa
cgcttcctcaatcccgagcgcgtgtcgatgccggacttcgacatcgatttctgtcaggac
cgccgcggcgaggtgatcgattacgtgcagcgccgctacggcgccgaccatgtcgcgcag
atcattaccttcggtacgctgcaggcgcgcggcgtgttgcgcgacgtcggccgtgtgctg
cagatgccttacggccaggtcgacaagctgaccaagctcgtgccgcagaatccggcggcc
cccgtgacgctcgccaaggcgatcgagggcgaaccgaagctgcaggccttccgcgacgaa
gacccggtggtcgcgcgtgccttcgacattgcccagcgtctcgagggactgacgcgccac
gcctcgacccacgccgcgggcatcgtgatcggtgaccggccgctctccgaactcgtgccg
ctctatcgcgatccgaaatcggacatgccggtcacccagttcaacatgaaatgggttgag
cccgcgggcctcgtaaaattcgacttcctcggcctcaagacgctgacggttctcgacgtc
gcggtgaagctcttgaaacagagcaacatccacgtcgatcttgcgcacctgccgctcgac
gacaaacaaacctacgacatgctgacccggggcgatgtggtcggcgtgttccaggttgaa
agtcagggcatgcggcgcgcgctcgtcgatatgcggcccgaccgcttcgaggacatcatc
gcgctcgtcgcgctctatcgtccgggcccgatggcgaacatcccgacctattgcgcgcgc
aagcacggcgacgaggagcccgaatatctgcacccggtgctggagccgatcctgaaagag
acgttcggcgtcatcatctatcaggagcaggtgatgcagatcgcgcaggtgatggcgggc
tattcgctcggagaagccgacctgctgcgccgcgcgatgggcaagaagatccgtgccgag
atggaaaagcagcgcgtgcgctttgtttcgggctcggtcgagcacagcatctccaagtcg
caggctgaccagattttcgaactgctcgcgaagttcgccgactacggcttcaacaagagc
catgctgcggcttatgcgctcgtgtcctaccagaccgcctacatgaaggcgcattatccg
gtggagttcatcgccgcgtcgatgacactcgataccggcaacaccgacaagctctctgaa
ttccgcgccgaagcgcagcgcctcggtatcaaggtcgagccgccgtcgatcaatcgctcg
gaaggcaccttcactgtcggtgagaacacgatcttttattcgctcgccgcgctgaagggg
gtgggaacgcatgccgtcgacatgatcgtcgaggcgcgcaagaacggcgggccattcacc
tcgctgtcggattttgccgcgcgcgtgccgccgcgcgcgatcaacaagcgcgtgctggaa
agccttgccgccgccggcgcgttcgacacgatcgagccgaaccgtgctgcggtgttcgcg
ggcgccgatgcgatcctcgctgcctgtcagcgcagccacgaggaggcagtgctcggccag
agcgatatgttcggcggacagaccggcgggccggtcatcacgctgccgcatgtcgagccg
tggctgccggccgagcggctgcagcgcgaatacggcgcggtcggcttcttcctctccggc
catccgctcgatgattacaaggtcgtgctgcagcggctcaacgtgcagtcgtgggcggag
tttgcgagcgccgtgaagaatggccgcaccgcgggcaaggttgccgcgacggtggtctcg
cgcatggagcggcgcaccaagaccggtaacaagatggggatcatcgggctctccgatccc
accggacacttcgaggctgtgctgttctccgaaggactcggccaattccgcgaattgctg
gagccggggctggcggtgcttctgcagctcagcgcggagttgcagggcgaggacgtgcgc
gcgcgcatcgccaatgttgagctgctcgatcaggcggcggcgaagacctcgatggcgctg
aagatttttctgcgcgacgacaagccgctggaatcgatccgccgccgtctcgaggatcat
gcgcgcggaggcggcgcgggatcgtccgcacgcgcgggcgaagtcacgctggtgatgatg
cttgatcttgaaaccgaggtcgaaatgaggctgcgcgaccgctacaaagtgtcgccgcag
attgcgggcgcgctgaaggcgattaccggcgtcgtcgatgtacagacgctttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (22)   

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