KEGG   Oryctolagus cuniculus (rabbit): 100345657
Entry
100345657         CDS       T03373                                 
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
  KO
K20103  ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocu03019]
    100345657
Messenger RNA biogenesis [BR:ocu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     100345657
SSDB
Motif
Pfam: DEAD ResIII Helicase_C
Other DBs
NCBI-GeneID: 100345657
NCBI-ProteinID: XP_008247795
Ensembl: ENSOCUG00000006355
UniProt: G1SQV4
Position
2:complement(46716381..46994009)
AA seq 1710 aa
MDFKKCTTFLEEMSQLILSQMPRAEYSSLFNDFVESEFFLIDGDSLLITFVCEQSLKKGQ
NLHFFYLVEHYLLDLTSKGGQFSIVFFKDAECAYFNFPELLPLRTALILHLQNNTTIDVR
TEFSGCLSDEWQVFLEESYPYFLIVADEGLNHLQTHLFNFLMIQTWSLKVNVVLFSGQES
YILRLYAYLMLSLSKLREFFKQNVKTIKSAYEILLKQWEECRDVELATVFGDLKWENMME
EVCETAFLLQQIWPEGADIRRVLCVTSCALTLELYHRRLENRRKSTSGQKTDTQEVEGHC
LSLQETEDLCKLHCLSVVFLLHLPLSQRASARFITSPWIQEIQTFLKMKSWCEYFILSNI
SIFESWNLDLIHLSDLSDEALLKNIVFYYENENVQGLHLDLGEGIAKDYEHLWNAVSKLV
TDFDVGKPFPLRTTKLCFLRETPSPIKDGSEEKMTNLGFIPMSSDVVDKFAGDILKDLPF
LKSDDPVVTSLVKQKEFDELVHWHSHKPLSDEYDRTKGQFDENSRDPRVLRSVQKYHVFQ
RFYGNSLESVSSKLIVTEATKPKKNFGEPKNKKVHETKAEIITRENKKRLFAKEEQKEEQ
KWNALSFSIEEEMKENLISGIKNLEDFLKSCKSNSVKFRVEIAGLTACFTAWKEHCRGEG
KTTKDLSIAVQMMKRIHSLMEKYPELLQEPDQQLIARCLHYLGFHELASSLCPTQAIGDE
TKMKMTKYSVGLGPARFQLQYMGHYLIREERKDPDPRVQDFIPDTWQRELLDVVDNHESA
VIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTKALVNQVAATVQNRYAKMLPNGEA
LCGVFTRDYRHDALNCQVLITVPACFEILLLAPHRQQWVKKIRYVIFDEVHCLGGEIGAE
IWEHLLVMIRCPFLALSATISNPEHLTAWLQSVKQYWRQEDALIEKKIASKKNHASRTNF
PKYYFRIRQSYKVRLVLYGERYNDLEKYICSVNGDDIYFEHFHPCAALTTDHIEHYGFPS
DLSLSPRESVQLYDTMFQIWDSWPRAQELCPENFIHFKNKLVIKKLDARKYEESLKAELR
NWITDGHVQQAKMVLKHLSPDSDVSTGNMTRMFPLLVEKLREMEKLPALFFIFSLEAVED
RAKSVKEFLEDKQEKRRPPKADKEAQDMANKLRKVKKSIEKQKMLDEKGQKNRTTDQSLI
REAEHDSLLRSLEKNMETPQDCTYADRKVIDAETLQMVFDRVKFQRKGRELKDLAERGIG
YHHSSMGAKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSIYLDALNYRQM
SGRAGRRGQDHLGDVYFFNIPLPKIEKLIKSKVPELRGQFPFSITLILRLMLLVSRGDDP
EDAKAKVLSVLKHSLLSFKQPRVMEMLKLYFLFSLQFLMKEGYIDQEGNPMGFAGLVSHL
HYHEPSNLVFVYFLVRGLFHNLCQPTTKGSKHFSQDTMEKLLLVLANLFGRRYLPAKFQD
TTLKFYQSKVFLDDLPEDFSAALNEYNMNVTKDFASFLQIVSKLADMKQEYELPLSKIEF
TGKECEGSQLVSHLMNCKEARVAVSPFACLSGNFDSDLLQPGISDHLTLRTIGINHTQAP
VLWLQKFDNQGRRIPLDAYALDFYKHGSLMGLVQDNRLNAGAAYILLKDFALTIKAISVS
LRELCENEDDNVVLAFEQLSETFFEKFKKV
NT seq 5133 nt   +upstreamnt  +downstreamnt
atggattttaaaaaatgcacaacgtttttagaggaaatgtcacagttaattctgagtcaa
atgccaagagctgaatattccagtttattcaatgactttgttgaatctgagtttttcctg
attgatggagactcattactcatcacatttgtatgtgaacagtcattaaagaaagggcag
aatctccacttcttctatctggttgaacactaccttttggatctcactagtaaaggagga
caattttccatagttttcttcaaggatgccgagtgcgcgtacttcaacttccctgaactt
cttcctttgagaactgccctaatccttcatcttcagaataacaccaccattgatgttcga
actgagttttctgggtgcttatcagacgagtggcaagtttttttggaagagagttacccg
tatttcctgatagttgcagatgaaggcctgaaccatctacaaacacatcttttcaatttc
ttaatgattcagacttggtcattgaaagtcaatgttgtgcttttctcagggcaagaatct
tatatccttcgactttatgcctaccttatgctaagcttgtctaaactacgggaatttttc
aagcagaatgtaaagacgatcaagagtgcctatgaaatcctacttaaacaatgggaagag
tgcagagatgtagaattagcaacagtttttggagatttaaaatgggaaaatatgatggaa
gaggtgtgtgagactgcttttctgcttcagcaaatctggccggaaggagctgacatccgg
cgtgtcctttgtgtgacttcatgcgcgctgactttggaactgtaccatcgtcgtttagaa
aacagaaggaagagcacatctggtcagaaaactgacacccaagaggtggaaggtcactgt
ttaagcctgcaggagacagaagatttgtgcaaactgcattgcctcagtgtggtgtttctt
ctccatttacctctttctcaaagagctagtgctagattcatcacctccccttggattcag
gaaattcagactttcttaaaaatgaaaagttggtgtgaatacttcatcctaagtaacata
agcatttttgaatcttggaatctggatttaattcacctttctgacttgagtgatgaggct
ttgttgaagaacattgttttttattatgaaaatgaaaatgtacaaggcctgcatttggat
ttgggagaaggcattgcgaaggattacgaacatctctggaatgcagtatcgaagctggtc
acagactttgatgttggaaagccttttcctctgaggacaacaaaactttgttttcttagg
gagactccatcaccaatcaaagatggctctgaggaaaagatgactaatttgggttttatt
ccgatgtcatctgatgtggttgataagttcgctggggacattttgaaagatttgcctttc
ctgaaaagcgatgatcctgtcgttacttcactggttaaacaaaaggaatttgatgaactg
gtgcactggcactctcacaagcccctcagcgatgaatatgacaggacaaagggccagttt
gacgaaaactctagagacccacgtgtactaagatctgtgcaaaaatatcatgtttttcaa
cggttttatggaaattcattagaatctgtctcttcaaaactcatcgtaactgaagctact
aagccaaagaagaattttggtgaacccaagaacaaaaaggtacatgagactaaagctgaa
ataattactagagagaataagaagaggttatttgccaaggaagaacagaaagaagaacaa
aaatggaatgctctgtcattctctattgaagaggaaatgaaagagaacctaatctctgga
ataaagaacctcgaagattttttgaaatcatgtaaaagtaactcggtgaaatttcgagtt
gaaatcgcagggctgactgcctgcttcacagcatggaaagagcattgccgaggtgaagga
aaaaccacaaaagacttaagtatagctgttcaaatgatgaaaaggatccactccttgatg
gaaaaatatccagaacttttgcaagaaccagatcagcaactcatagccagatgtcttcac
tatttgggatttcatgagttggccagttctttatgtccaacccaggctataggagatgaa
acaaagatgaaaatgactaagtattcagttggccttggaccagcacggtttcaactgcag
tacatggggcattatttgatccgggaggagagaaaggacccggaccccagggtccaggat
tttattcctgacacatggcagcgagagctcctggatgtagtggacaaccatgagtcggca
gtgatcgtggccccgacgtcctcgggcaaaacctacgcctcctactactgcatggagaaa
gtgttgaaggagagcaatgaaggggtggtcgtgtacgtggcgccaacaaaggcccttgtt
aatcaagtagcagcaactgttcagaatcgttatgccaaaatgctgccaaatggggaggct
ctgtgtggtgtttttacaagggattatcgtcacgatgccctgaactgtcaggtacttatt
acagtgcctgcctgctttgaaattctgctgctggctcctcatcgtcaacaatgggtgaaa
aagatcagatatgttatatttgatgaggtccattgtcttggtggagaaattggagcagaa
atctgggagcatctccttgtcatgatcagatgtccttttctggccctttctgctaccata
agtaaccctgaacatctcactgcgtggctgcagtcagtgaaacagtactggagacaagaa
gatgctttaatagaaaaaaaaattgcttctaaaaagaatcatgccagtcgtaccaatttc
cccaaatattactttcgaataagacagtcgtataaagttagacttgtgctctatggagag
agatacaatgatttagagaagtacatatgctcagtaaacggggatgacatctactttgaa
cattttcacccatgtgctgcactaacaacagatcatatcgaacactacggattcccgtct
gatctttccctttcacctcgagagagcgtccaactttatgacaccatgtttcaaatctgg
gacagttggccccgggctcaggaactgtgtccagagaacttcattcattttaagaataaa
ttagtcattaagaagttggatgctagaaaatatgaagagagcttaaaggcagagttaagg
aactggattacagatggccacgtacagcaggccaaaatggtactgaaacatcttagtcct
gattcagatgttagtacaggaaacatgacaagaatgttcccacttcttgtggaaaagcta
agggaaatggagaagttgccagcactgtttttcatattcagcttagaagctgtggaagac
agagctaaaagtgtgaaggaattcctggaggataaacaagagaaaagacgacctcccaaa
gctgataaggaagcccaagacatggctaataaacttcgaaaagtaaaaaaatccatagag
aaacagaagatgctagatgaaaaaggtcagaagaacagaactacagaccaaagcctaata
cgtgaagctgaacatgacagtctcctgaggagtctggagaagaacatggagaccccccag
gactgcacatacgctgatcggaaagtgatagacgctgagactttgcagatggtgtttgac
cgagtaaaatttcaaagaaaaggccgcgaactgaaagatttggcagaaagaggtattgga
tatcatcacagctccatgggcgccaaggaaaaacagttagttgaaattctctttaggaaa
ggatttattagggtggtgacagctactggaacacttgctttgggaatcaacatgccttgt
aaatctgtggtttttgctcaaaactccatctatctggatgctttaaattacagacagatg
tctggtcgggctggaagacgaggccaggaccatctaggagatgtgtatttctttaatatt
ccattgcccaaaatagaaaaactcataaaatccaaagttcctgaactgcgaggacagttc
cctttcagcatcaccttgatcctgcgactcatgctgttggtttccaggggagatgaccca
gaggacgccaaggccaaggtgctgtctgtgctcaagcattcactgctgtccttcaaacaa
cccagagtcatggagatgctaaaactttacttcttgttttctttgcaattcctgatgaaa
gagggctatatagatcaagaaggtaacccaatgggttttgctggacttgtatcacatttg
cattatcatgagccttctaatctcgtttttgtctattttcttgtaagaggacttttccat
aatctttgccagcctaccacgaaaggctcaaagcatttttcccaagatactatggaaaag
ttattattggtattggcaaatctgtttggaagaaggtatcttccagcaaagttccaagat
actaccttaaagttttatcagtcaaaggtattccttgatgatcttcctgaagatttcagt
gctgctttaaatgaatataacatgaatgttacaaaggactttgcctctttcctacaaatc
gtttccaaattggctgatatgaaacaggaatatgaacttccattatcaaaaattgaattc
acaggtaaagaatgtgaaggctctcaacttgtgtctcacttgatgaactgcaaggaagca
agagtagccgtttcgccatttgcttgtctgtctggaaattttgatagtgatttacttcaa
ccaggaatttcagatcatcttactctgcgcacaattggtatcaatcacactcaagctcct
gtgctgtggctgcagaaatttgataaccaaggaagaaggattccacttgatgcttatgca
cttgatttctacaaacatggttccttgatgggattggtccaggacaacaggctaaatgca
ggagcagcttatatattattgaaagattttgcactcaccattaaagctatcagtgtttcc
ttacgtgaactatgtgaaaatgaagatgacaacgttgtcttagcatttgaacaactgagc
gaaaccttttttgaaaaatttaaaaaagtctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (14)   
   RefSeq(nuc) (6)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (62)   

Download RDF
DBGET integrated database retrieval system