KEGG   Oryctolagus cuniculus (rabbit): 100353275
Entry
100353275         CDS       T03373                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03018  RNA degradation
ocu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100353275
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100353275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocu03019]
    100353275
   03041 Spliceosome [BR:ocu03041]
    100353275
Messenger RNA biogenesis [BR:ocu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100353275
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100353275
Spliceosome [BR:ocu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100353275
 Complex C
  U2 snRNP components
    100353275
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 100353275
NCBI-ProteinID: XP_002714328
UniProt: G1SHV1
Position
12:135134746..135141033
AA seq 201 aa
MVPASPTPLATTPAHACAVVAVRPRRKWDGRSPAPFPAASRAPAHRLSRSHKPFARSPCV
PGALRAPARPRPAPRAGSCSGSRPASGPRHPARSCLGWSAALGASTMLFYSFFKSLVGKD
VVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPA
DEVDTQLLQDAARKEALQQKQ
NT seq 606 nt   +upstreamnt  +downstreamnt
atggtcccagcatctccgaccccgctggccaccactccggcccacgcctgcgcagtagta
gccgtccgcccccggaggaagtgggacggcagaagccccgcccctttcccggcggcctcc
cgcgctcccgctcaccggctctcccggagccacaagccctttgcgcgctccccttgcgtc
cccggagctctccgcgcgcctgcgcgaccgcgccccgccccacgcgcgggctcgtgttcc
ggttcccgcccggcctccggcccgcggcacccggcccgctcctgcctaggttggtcggcg
gccctcggcgccagcaccatgctcttctactccttcttcaagtcccttgtgggcaaggat
gtggtcgtggaactcaagaatgatttgagcatctgtggaaccctccattctgtggatcag
tatctcaacatcaaactaactgacatcagcgtcacagaccctgagaaataccctcacatg
ctgtcagtgaagaactgcttcatccggggctccgtggtgcgctatgtgcagttaccagca
gacgaggtggacacacagttgctacaggatgcagccaggaaggaagccctgcagcagaag
cagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (170)   
   KEGG ORTHOLOGY (1)   
   RefGene (166)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (187)   

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