KEGG   Oryctolagus cuniculus (rabbit): 100358256
Entry
100358256         CDS       T03373                                 
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu04151  PI3K-Akt signaling pathway
ocu04510  Focal adhesion
ocu04512  ECM-receptor interaction
ocu04820  Cytoskeleton in muscle cells
ocu04926  Relaxin signaling pathway
ocu04933  AGE-RAGE signaling pathway in diabetic complications
ocu04974  Protein digestion and absorption
ocu05146  Amoebiasis
ocu05165  Human papillomavirus infection
ocu05200  Pathways in cancer
ocu05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    100358256
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100358256
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100358256
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100358256
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    100358256
  09154 Digestive system
   04974 Protein digestion and absorption
    100358256
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100358256
  09162 Cancer: specific types
   05222 Small cell lung cancer
    100358256
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    100358256
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    100358256
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    100358256
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ocu04147]
    100358256
   00536 Glycosaminoglycan binding proteins [BR:ocu00536]
    100358256
Exosome [BR:ocu04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   100358256
Glycosaminoglycan binding proteins [BR:ocu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100358256
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 100358256
NCBI-ProteinID: XP_051705932
Ensembl: ENSOCUG00000013232
Position
8:143227..272734
AA seq 1669 aa
MGPRLGLWLLLLPAALLLHEERSRAAAKGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVI
GFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGAAGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGERGPLGPPGLPGFTGNPGPPGLPGMKGDPGEILGHIPGTLLKGERGFPGP
PGIPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGEKGDQGVSGPP
GVPGQAQVKEKGDFATKGEKGQKGEPGFQGIPGIGEKGEPGKPGPRGKPGKDGEKGEKGS
LGFPGDSGYPGLPGRPGPQGDKGEAGPPGPPGIVIGTGPLGEKGERGFPGAPGLRGEPGP
KGYPGIQGQPGLPGFPVPGQPGAPGFPGERGEKGDQGLPGVSLPGPSGKDGLPGLPGPPG
PPGQPGHTNGIVECQPGPPGDQGPPGTPGQPGLSGEVGEKGQKGDSCLVCDMEGLRGPPG
PQGPPGEIGFPGQPGAKGDRGFPGRDGLEGLPGPQGVPGLMGQPGAKGEPGEIYFDARLK
GDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDI
GPPGPPGFGPIGPAGDKGQAGFPGSPGSPGLPGPKGEAGRVVPLPGPPGAEGLPGSPGFQ
GPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPQGAAGLPGDMGPPGSPGRQGFSG
SPGSPGVPGQKGEPGIGLPGLKGLPGLPGIPGTPGEKGSVGGPGIPGEHGAIGPPGLQGI
RGDPGPPGVQGPVGPPGAPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG
PKGDKGAQGLPGLTGQSGLPGLPGQQGTPGIPGFPGPKGEMGVMGTPGQPGSPGPAGAPG
LPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIG
PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPG
TPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPGIGIPGRPGDKGDPGVAGFPGSPGE
KGEKGSTGIPGMPGSPGPKGSPGSAGYPGSPGLPGEKGDKGLPGLDGVPGIKGEAGLPGQ
PGPTGPAGQKGEPGRDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGDVGFPGLAGSP
GIPGPKGEPGFAGPPGPQGQPGLPGAPGRPVEGPKGDRGPQGQPGLPGLPGPMGPPGLPG
LDGLKGDKGNPGWPGAPGAPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGQKG
LPGLQGIKGDQGDQGIPGPKGLPGPPGPPGPYDIIKGEPGLPGPEGPPGLKGLQGPPGPK
GQQGVTGSVGLPGPPGIPGFDGAPGQKGETGPFGPPGPRGLPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTIHDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIVGDNIRPFISRCAVCEAPAMVMAV
HSQTIQIPPCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELHTHVSRCQVCMRRT
NT seq 5010 nt   +upstreamnt  +downstreamnt
atggggccccggctcggcctctggctgctgctgctgcccgccgccctcctgctgcacgag
gagcgcagccgggccgccgcgaagggtggctgcgctggctccggctgcgggaagtgtgac
tgccacggagtgaagggacagaagggagaaagaggcctcccagggctacaaggagtcatc
ggctttcccggaatgcaaggacccgaggggccgcagggaccaccaggacaaaagggtgac
accggagagccagggctgcccggcacgaaagggacaaggggacctccaggagccgccggc
taccccgggaacccaggacttcctggcattcccggccaagatggccccccaggcccccca
ggtatccccggatgcaacggtacaaagggagagagaggccccctgggcccacctggtttg
cctggattcacgggaaatcctggaccgccagggttgccaggcatgaagggagatccaggg
gagatccttggccacatccccgggacactgttgaaaggtgaaagaggatttcctggaccc
cccggcataccaggctccccaggattgccggggctgcaaggacctgttggccctccaggg
ttcactggacccccgggtcccccaggccctcccggccctccaggtgaaaagggccaaatg
ggcttaagtttccaaggaccgaaaggtgaaaagggagatcaaggcgtcagtgggcctccg
ggagtcccaggacaagctcaagtgaaggagaaaggggactttgccaccaagggagagaag
ggtcaaaaaggcgaacctggatttcagggaattccagggattggcgagaaaggcgaaccc
ggaaaaccagggccccggggaaaacccggcaaagacggcgagaagggggagaaggggagc
ctgggcttccctggagactcggggtaccccggactccctggccgcccaggcccgcaggga
gacaaaggagaagctggccctccgggcccacctggcattgtgatcggcacgggacctttg
ggagagaaaggagagcgaggcttcccgggagcaccggggctcagaggagagccaggccct
aaaggttacccagggatccaaggccagccaggacttccaggctttcctgtgcccggccag
cccggtgctcccggcttccccggcgagagaggagaaaaaggcgaccagggactgccaggc
gtgtctttgccaggaccaagcggaaaggacgggctcccaggccttcccggcccccccggg
ccccccgggcagccaggccacaccaatggcatcgtggagtgtcagcccgggccacctggc
gatcagggtcctcccggcacaccagggcagccgggattgagtggcgaagtcggagagaaa
ggtcagaagggtgacagctgcctcgtctgtgacatggaagggctgcgtggaccccctggg
ccgcaggggcccccaggagagatagggttcccgggccagccaggggccaagggcgaccgc
gggttccccggcagggatggacttgaaggattgccgggaccacaaggtgtgccgggcctg
atgggccagcccggagccaagggagagcccggtgagatctatttcgacgcaagactcaag
ggagacaaaggagaccccggcttcccaggacagcccggcatgccagggagagcggggtcc
cccgggagagatggccacccgggcctgcctggtcccaaaggctccccgggctcagtagga
ttgaaaggagaacgcggcccccctgggggtgtcggcttccccgggagtcgtggtgacatc
ggcccccctggacccccagggtttggtcctattggccccgctggagacaaaggacaagca
ggttttcccggaagccccgggtcccccggcctgccaggtccgaagggtgaagcaggacga
gttgtccccttacctggcccgcctggggcagaaggactgccggggtccccgggtttccaa
ggcccccaaggcgacaggggcttccctggaaccccaggacgaccaggcctccccggagag
aagggcgccgtgggccagcccgggattggatttccagggcctccaggcccccagggtgcg
gccggcttacctggagacatgggacctcctgggagtccaggtcgccagggattcagtggc
tcacctggcagcccaggtgtgccaggccaaaagggggagcctggcattggtctgccagga
ctcaagggccttccaggccttcccggcattcctggcacgcctggggagaaggggagcgtc
ggaggacccggcattcccggagagcatggagccattggcccccctgggcttcagggcatc
cgaggcgaccccggacctcctggagtacaaggccccgtgggacctccgggagccccagga
ataggcccccctggagctatgggcccccctggagggcagggaccgccaggctcatcaggt
cctcctggcgtgaaaggagagaagggtttccccggcttcccgggactggacatgcctggc
ccgaaaggagacaaaggtgcccaaggacttcccggcttaaccggacagtcggggctcccc
gggcttcctggccagcagggcacgcctggaatccctggcttcccaggtcccaagggagaa
atgggcgtcatggggacccctgggcaaccgggctcgccgggaccagcgggcgccccagga
ttgccgggtgaaaaaggggaccacggcttcccgggctcctcaggacccaggggagaccct
ggcttcaagggtgacaaaggagacgtcgggctcccgggcaaaccgggctccatggataaa
gtggacatgggcagcatgaaaggacagaagggggaccaaggagagaaagggcaaatcgga
ccaactggtgacaagggatcccgcggagaccctggaaccccaggagtgcccgggaaggac
gggcaggcggggcacccaggacagccagggccgaaaggtgatcccggcatcagcggaacc
ccaggtgccccgggcctccctgggcctaaaggatcggttggtggaatgggcttgccagga
accccgggagagaagggcgtgcctggcatccctggtccccagggcgtccctggcttacct
ggagagaaaggagccaaaggagagaaggggcaggcaggtctgcctggcatcgggattccc
ggaaggcctggagacaagggagacccaggggtggccggattcccaggaagccccggagaa
aagggggagaaaggcagcaccgggattccaggaatgccggggtccccaggcccgaagggg
tctccaggcagtgccggctatccagggagccctggcttgcctggtgagaaaggtgacaaa
ggcctccccggattggacggtgttcctggcatcaaaggagaagcaggccttcctgggcag
cccggtcccacgggccctgcaggccagaagggggagcccggcagggacggaatcccaggg
tctgccggggagaagggtgaaccaggtctgccaggaagaggattcccaggattcccaggg
gccaaaggagacaaaggttccaaaggcgacgtgggtttcccagggttggctgggagccca
ggaatccccggacccaaaggcgagccaggattcgcgggtcctcccgggccccaaggacag
cctgggctgcctggcgctcccggccgccccgtggaggggcccaaaggagaccgaggacct
cagggacagccaggcctgccagggcttccgggacccatggggccgccaggactccctggg
ctggatggactgaagggagacaaggggaatccaggctggccaggtgcccccggggcccca
gggcccaagggagatccaggcttccagggcatgccgggcattggcggctctccagggatc
acgggctccaagggcgacatgggaccccccggagttcccgggtttcaaggtcagaaaggt
cttcctggcctccagggaattaaaggggatcagggtgatcaaggcatccccggacctaaa
ggtctcccagggccccctggccccccaggtccttacgatatcatcaagggcgagccagga
ctcccaggccctgagggtcccccaggtctgaaagggcttcagggaccaccaggccctaaa
ggacagcaaggcgtgacgggatcggtgggcttacctggaccgcccggtattcctggcttc
gatggtgcccctggccagaaaggagagacgggaccatttgggcctcctggtcctagaggg
ctccctggtcctccaggccctgatgggctgccaggatccatggggcccccaggcacccca
tctgtggaccacggcttcctggtgaccaggcacagtcaaacgatccacgacccgcagtgc
cctcctggaaccaaaattctctatcacgggtactccctgctttacgtgcaaggcaacgag
cgggcccacggccaggacttgggcacggccgggagctgcttgcgcaagttcagcaccatg
cccttcctgttctgcaacatcaacaacgtgtgcaacttcgcctcccgcaacgactactcc
tactggctgtccacccccgagcccatgcccatgtccatggcgcccatcgtcggggacaac
atcaggcccttcatcagcaggtgcgccgtgtgtgaggccccagccatggtgatggcggtg
cacagtcagaccattcagatcccgccctgccccaacgggtggtcctcactgtggatcggc
tactcctttgtgatgcacaccagcgccggggctgaaggttccggccaagccctggcttcc
cccggctcctgtctggaagagtttagaagcgcaccgttcatcgagtgccacggccgtggg
acctgcaactactacgccaacgcgtacagcttctggctcgccaccatagagagaagcgag
atgttcaagaagcccacgccgtccaccttgaaggcaggggagctgcacacgcatgtcagc
cggtgccaagtctgtatgagaagaacatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (11)   
   KEGG PATHWAY (11)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (2)   
   Pfam (2)   
All databases (64)   

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