KEGG   Olea europaea var. sylvestris (wild olive): 111403132
Entry
111403132         CDS       T05244                                 
Name
(RefSeq) polyadenylate-binding protein 7-like isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
oeu  Olea europaea var. sylvestris (wild olive)
Pathway
oeu03015  mRNA surveillance pathway
oeu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oeu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    111403132
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111403132
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oeu03019]
    111403132
   03041 Spliceosome [BR:oeu03041]
    111403132
Messenger RNA biogenesis [BR:oeu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     111403132
   mRNA cycle factors
    Stress granule specific factors
     111403132
Spliceosome [BR:oeu03041]
 Complex C
  Other components
   Complex C specific factors
    111403132
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5
Other DBs
NCBI-GeneID: 111403132
NCBI-ProteinID: XP_022887296
Position
11:6002457..6008726
AA seq 577 aa
MAVSTTATAPLASLYVGDLHQDVTDAHLFDAFSEFKSLASVRVCRDSTTGRSLGYGYVNF
ISPQDASQAIEGKNHFTLNSKAIRVMWSHRDPGARRSGIGNVYVKNLSDSIDSVKLQEMF
QKFGNVLSCKVVTSDDGKSKEYGFVQFESEISANAAIEKLDGSTVGGKKMYAGKFVKKSD
RSLPSPEAKYTNLYIKNLDPGVTEEVLKEKFSEYGKIISLIISKDENGESRGFGFVNFEN
PDDARHAVEAMHGSRLVGSQVIYVARAQKKAEREQMLHYQFDEKRKERVLKYQTSNVYVK
NIGDDITDDQLREYFSQWGTITSAKLMRDDKGMSKGFGFVCFSNPKEAIKAVNTFHGSMF
HQKPLYVAIAQRKEERQAQLLLKFSQVMRGFAGQSAVIPGRYSSLYYPVPGVSTQVAARP
RPGMMYQPFGMRPGWGADGYANYSIPAFNASPFRLRARHVKYMPNGHSREMNDESDAVTS
SEGSDTLSSMLAAAPPDQQKQILGEHLFPLVSQHKPDLAAKITGMLLEMDNSELLLLLES
PDSLVTKVEEAVQVLKLKVSNQDAIHPNYLSAEVAVS
NT seq 1734 nt   +upstreamnt  +downstreamnt
atggcggtttcaacgacggcaacagcgcctctggcgtcactgtacgtgggtgacctgcac
caggacgtgacggatgcacatctttttgatgccttctcggagtttaagagcctcgcgtcc
gtacgagtctgccgtgattccaccaccggccgctctctcggttatggctacgtcaacttc
atctctccacaagacgcttctcaggctatagaggggaaaaatcattttaccttgaactca
aaagcaattagggttatgtggtcacatcgtgatccaggtgcaagaagaagcgggattgga
aatgtgtatgtcaagaatttgagtgattcaattgacagtgtgaagcttcaagaaatgttc
caaaagtttggtaatgtactgtcttgtaaagttgtcacttctgatgatgggaagagcaaa
gaatatggatttgtccagtttgagtctgaaatttctgcaaatgctgccattgagaagctt
gatggctctacagttggaggcaagaagatgtatgctggcaagtttgtgaaaaagagtgac
cgatctctacccagtcctgaagcaaagtatacaaatctgtacatcaagaatttggatcca
ggtgtcactgaggaagtccttaaggagaagttctctgaatatgggaaaattatcagcttg
atcatctcaaaagacgagaatggggaatcaagaggctttggatttgtcaacttcgagaat
ccagatgatgccagacatgcagtggaagccatgcatggatcaagacttgtaggctcacag
gttatatatgtggcccgggcacaaaagaaagcagagcgtgaacagatgttacattaccag
tttgatgagaaaaggaaggagcgagtcttaaaataccagacttcaaatgtttatgtgaag
aatattggtgatgatatcactgatgatcagctgcgggaatactttagtcagtggggcaca
attacttctgcaaagctgatgcgagatgataaaggaatgagcaaggggtttggatttgtt
tgcttctccaaccccaaggaagcgatcaaagctgtgaacacttttcatggatccatgttt
catcagaagccattgtatgtggcaattgctcagaggaaagaggaaagacaagcccagttg
ctgctaaaattttcccaggttatgagaggatttgcaggacaatcagctgtcattcctggt
cgatattcttctctttactacccagttcctggtgtcagtacgcaagttgcggctcgacct
cgacctggtatgatgtatcaaccttttggaatgaggccaggatggggtgctgatggatat
gcaaattattctatacctgcttttaatgcatctccatttcgcctgcgtgccaggcatgtc
aagtacatgcctaatgggcattcacgtgagatgaacgatgaatctgatgctgtaactagc
tctgaagggtcagatacgttaagcagcatgcttgctgcagctcctccggatcagcagaaa
cagatacttggggagcatctttttcccctcgtcagtcaacacaagcctgatcttgctgca
aagataacgggaatgctgttggagatggacaattcagaattacttctattattagagtca
ccagattcactagtgacaaaggtggaagaagctgttcaggttctcaagctcaaagtttcg
aaccaagatgcaatccatccaaattacctttctgctgaagtcgcagtaagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (49)   

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