KEGG   Olea europaea var. sylvestris (wild olive): 111407478
Entry
111407478         CDS       T05244                                 
Name
(RefSeq) protein CLP1 homolog
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
oeu  Olea europaea var. sylvestris (wild olive)
Pathway
oeu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oeu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    111407478
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oeu03019]
    111407478
Enzymes [BR:oeu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     111407478
Messenger RNA biogenesis [BR:oeu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     111407478
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N nSTAND3 CbiA AAA_22 AAA_16 FtsK_SpoIIIE ABC_tran ATP_bind_1 DUF1611 SRPRB MMR_HSR1 AAA_29 AAA_24
Other DBs
NCBI-GeneID: 111407478
NCBI-ProteinID: XP_022892743
Position
13:7886483..7892382
AA seq 438 aa
MSYGGPAVGSTAASGPATIRQVKLEKECEFRVEVSPDAPLRLRLLIGSAEIYGTEIPPEI
WLTFPPRLKFAVFTWYGATIEVDGTTETDYTADETPMISYVNVHAVLDARRNRAKASPGD
SDASQGPRVIVVGPTDSGKSTLARMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPI
ELPIDPVEGIPLDMPLVYFHGHTTPSVNVDLYKVLVKELAQILERQFAGNAESRAAGMVI
NTMGWIESTGYELLLHAIDTFNATVVLVLGQEKLCSMLKDVLKNKPNVDVVKLQKSGGVV
SRNAKFRQKARSHRIREYFYGLSNDLSPHSNVANFSDLCIYRIGGGPQAPRSALPIGAEP
AADPTRLIPVNINRDLLHSVLAVSFAKEPDEIISSNVAGFIWITDIDFESKKITYLAPSA
GSLPGKYLIQGSLIWYEP
NT seq 1317 nt   +upstreamnt  +downstreamnt
atgtcttatggaggcccagccgtaggttcaactgctgcgagtggcccggcaacaataaga
caagtgaagcttgaaaaggaatgcgaattcagagttgaagtcagtcctgatgcgccactc
cgcctccgtctcctcatcggctctgccgagatatacggaaccgaaataccgccagagata
tggctaacttttcctcccaggcttaaattcgctgtttttacatggtacggtgccacaatt
gaagtggatggtacaactgaaactgattatacagcagatgagacacccatgatcagttat
gtgaatgttcatgctgtactggatgctcgaagaaaccgtgccaaagcttcacccggcgat
tcagatgcttctcagggtcctcgggttattgttgtgggacctacggattctggaaagagt
actttggcgaggatgcttcttagttgggcagctaaacagggatggaaacctacttttgta
gatttagacattggtcaaggatctataacaattcctggttgcattgctgcaactccgatt
gaactgcccattgatccagtggaaggaatacctcttgatatgcctctagtttacttccat
gggcacacgactcctagtgttaatgttgatctatacaaggtacttgtgaaggagcttgct
caaattttggagagacagtttgccggaaatgccgaatctcgagctgcaggcatggttata
aataccatgggatggatagaaagcactggttacgagttgctgctccatgcaattgataca
tttaatgcaactgtcgttcttgttctgggccaggaaaagctttgcagcatgctaaaagat
gttttgaaaaacaagcctaatgtggatgtagtgaaacttcaaaagtctggtggtgttgtg
tcgagaaatgcaaaattccgtcagaaggccaggtcccatagaatacgggaatatttttat
ggcctttcgaatgatctctctccacattctaatgttgcaaatttcagtgacttatgcatt
taccgaataggcggaggaccacaagccccacgttcagctctgccaattggtgcagagccg
gctgcagaccctacaagattgatccctgttaatattaaccgagacttgctccattcagtc
ctagctgtctcatttgccaaagaaccagatgaaattatttcaagtaatgttgccgggttc
atctggatcactgacattgactttgaaagcaagaaaatcacataccttgcaccatctgct
ggaagccttcccgggaaatacctgattcagggaagcctgatatggtatgaaccttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (15)   
   Pfam (15)   
All databases (32)   

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