KEGG   Olea europaea var. sylvestris (wild olive): 111407772
Entry
111407772         CDS       T05244                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
oeu  Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oeu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111407772
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oeu03019]
    111407772
Enzymes [BR:oeu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     111407772
Messenger RNA biogenesis [BR:oeu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     111407772
  mRNA degradation factors
   3'-5' decay
    Ski complex
     111407772
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk Ski2_N Helicase_C ResIII AAA_22 InvE_AD
Other DBs
NCBI-GeneID: 111407772
NCBI-ProteinID: XP_022893202
Position
13:complement(18314856..18341746)
AA seq 1356 aa
MDRVPAANGLSFRVGFTGHSGHLRIEPLPPVERPNPLHSLPDFIPPPAFPLETPETIKEY
IKEKHLLPRLDEDVFSPENAGRQWEFDWFDRAKTELELSFPRSVVVPRWEMPFRRKNHGL
GDERWEPNSVEVDVSELTVGAKDSGALPRIVGPAKDFVRGSINNRPFHPGGLDNTDSLGK
ILPDGACNGEWVKEVLNGGPAQVVPPGFKDGLDFGDLKGHSCTWNVFENQSAVKSAPDMN
EFSVQFDDLFKKAWEEDVIESVGDGHMLELKTEVKELESVKESSQTETEVKELYVAGVNT
KGEPSAIDQILSVESEKSMPRFDGDNDDDAQQQKEVWALSRGSEEIAERFYELVPDMALN
FPFELDPFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAFALASRHCTRAVYTAPIKTIS
NQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHY
VNDVERGVVWEEVIIMLPRHINFVLLSATVPNTNEFADWIRRTKQKQIQVICTTKRPVPL
EHCLFYSGELYKICENEQILPQGLKAAKDATKKKNTNVAGGTGTYSGSSAANDRALAQKR
ESFSQGKQNKHSGFQNLGNSGASWGNKNSGGSNAWGSRRSEASLWLSLINKLSKKSLLPV
VIFCFSKNRCDKSADKMTGTDLTTSSEKSEIRIFCDKAFSRLKGSDRNLPQVVRVQELLR
RGIGVHHAGLLPIVKEVVEMLFCRGVIKILFSTETFAMGVNAPARTVVFDGLRKFDGKEF
RQLLPGEYTQMSGRAGRRGLDKIGTVVVMCRDEIPEERDLKHVIVGSATKLKSQFRLTYI
MILHLLRVEELKVEDMLKRSFAEFHAQKNLPEQQQLLMLKLAQPNKAIECIKGEPAIEEY
YDLYSQAETYGNQITEAVMHSPVSQQYLTPGRVVVVKSQSARDHLLAVVVKAPSVNYKQY
IVLVVTPELPSSLPTQSDNENLREKKGSDFQILVPKSKRGLEDDYCSSVTSRKGSGIVNI
KLPHRGFAAGVSYEVRGVDNNEFLAICKHKIKIDQVRLLEDVSAGAYSITVQQLLTLKSD
GNKYPPALDPVKDLKLKDMNVVEAYHIWNSLLQKMAQNKCHGCIKLNENIKIARELKWHR
EEVNALKFQMSDEALQQMPAFQGRIDVLKEIGCIDSDLVVQIKGRVACEMNSGEELICTE
CLFENQLDDLEPEEAVAIMSAFVFQQKNTSEPSLTPKLSQAKKRLYDTAIRLGELQAQFK
LPVDPQEYAQENLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFRN
AAAIMGNSSIFKKMETASNAIKRDIVFAASLYITGV
NT seq 4071 nt   +upstreamnt  +downstreamnt
atggatcgggtccccgccgcaaatgggctctctttccgggtcggattcaccggccacagc
ggccacctcagaattgaacctctccctcctgtcgaacgccccaatcccctgcactcactc
cccgacttcattcctccaccagcgtttccgttggaaacgcctgaaactattaaggagtac
ataaaggagaaacatttgctgcctaggttggatgaggatgtcttttctccggaaaatgcg
ggacggcagtgggaatttgactggttcgatagagccaagaccgagctagagctttcattt
ccacggtcggtggttgttccaagatgggaaatgcctttcaggcgcaaaaaccatggcctg
ggagatgaaaggtgggagccgaactcggtagaggtagatgtatcagaactcacagtagga
gccaaggattctggtgctttgcctcgcattgttggacctgcaaaagattttgtaagagga
agcatcaacaaccgtccttttcacccaggtggcttggataatactgattccttgggaaag
atacttccagatggtgcttgcaatggtgaatgggtaaaagaggttcttaacgggggtcct
gcacaagtcgttcccccaggttttaaagatggactggattttggtgatctcaagggacat
tcttgcacatggaatgtttttgagaatcaaagtgcagtgaaaagtgcgccagatatgaac
gagttttccgtgcagtttgatgacttatttaagaaagcttgggaagaggatgtcatagaa
tctgtgggagatggccacatgttggagttaaaaacggaagtgaaagagctggagtctgtc
aaggaatctagtcagactgaaactgaagtaaaagagctgtatgtggctggtgttaacaca
aagggcgaaccatctgctatagatcaaattttgtctgttgagtctgaaaaatcgatgcca
aggttcgatggagataatgatgatgatgcacaacaacaaaaggaggtgtgggctcttagc
agaggcagtgaagagattgcagaacggttttatgaacttgttcctgatatggcgcttaat
tttccttttgaacttgatcctttccaaaaggaggctatctatcatcttgaaagaggggat
tctgtttttgtggcagctcatacgtcagctgggaagactgttgttgcagaatatgcattt
gctctcgcttcaagacactgtacaagagctgtgtatactgctccaattaaaaccatcagc
aatcagaagtacagagatttttgtgggaaatttgatgttggtctactcacaggtgatgtt
agcttgaggcctgaggcctcttgtctcatcatgaccactgagatattaagatcaatgctc
tacaggggtgctgacatcatacgtgacatagaatgggtcatattcgatgaagtgcattat
gttaatgatgttgaaagaggtgtagtttgggaagaagttattataatgcttcctaggcat
atcaactttgtgctactttcagccacggtaccaaacaccaatgagtttgctgattggatt
cgccggacaaaacaaaagcaaattcaggttatttgtacgactaaaagaccagtcccactg
gagcattgccttttttattctggagagctttacaagatctgtgaaaatgaacaaattctg
ccgcagggtttaaaagctgccaaagatgctaccaagaagaaaaacacaaatgttgctgga
ggcacaggaacctattctggatcttcagcagcgaatgacagggctctagctcagaaacgt
gaaagtttctctcagggaaaacaaaacaaacattctggattccaaaatttggggaattct
ggggctagttggggaaataaaaacagtggtggcagtaatgcttggggatcacggagatca
gaagcttctttgtggttgtctcttatcaacaagctttcaaagaaatccctcttaccagtg
gtcatattttgtttttcaaaaaatcgctgtgacaaatcagctgataaaatgactgggact
gacctcacaactagctccgagaaaagtgaaatccgaatcttctgtgataaagcattttca
aggttaaaaggatcagatagaaatctacctcaggttgttagagttcaagaactccttcgg
agagggattggtgttcaccatgctggattgcttccaattgttaaggaagttgtggaaatg
cttttctgtcgtggggtaatcaagattctgttttcaacggagacatttgcaatgggagtc
aatgccccagctaggacggttgtttttgatggtttgaggaagtttgatggcaaagaattt
cggcagctgcttcctggagaatatactcagatgtctggtcgtgctggcaggagaggacta
gataaaattggtacagttgttgtgatgtgccgtgacgaaatacctgaggagagggatttg
aagcatgttatagttggcagtgcaactaagcttaaatctcaatttcgactgacctacatc
atgatcttgcatctccttcgtgttgaagaactgaaggtagaagacatgctgaaaagaagt
tttgcagaatttcatgctcagaagaatcttccagagcagcaacaacttctaatgctaaag
cttgctcagcctaataaagccatcgaatgcataaagggcgagcccgctatagaagaatat
tatgatctgtactcacaggctgagacgtacggcaatcagattacagaggcagtcatgcat
tccccagtttcccaacaatatctcactcctggaagggtggtagttgtaaaatcacaatct
gcccgagatcacctattagcggttgttgtcaaagccccttctgttaactataaacagtac
atagtattagtggtgactccggaattaccttcatcacttcctacgcagtcagataatgaa
aatttgagagagaaaaaaggttctgatttccaaattttggtaccaaaatcaaaacgtggt
ttggaggatgattattgttcttcagtcacttctcgtaaaggatctggtattgtcaatata
aaattacctcaccgtggttttgctgctggagtgagttacgaggttaggggagttgataat
aatgagttcttggccatatgcaaacacaaaataaagattgaccaagttcggcttcttgaa
gatgttagtgctggcgcctattcaattactgttcagcagcttctgactctgaagtctgat
ggaaataagtatccacctgccttggatccagtgaaagatctgaagttgaaagacatgaac
gtcgttgaagcttaccacatttggaatagcctattacagaagatggcacagaataagtgt
catggatgtattaaattgaatgagaacatcaagatagctcgagaattgaagtggcacaga
gaggaagtgaatgctctgaagtttcaaatgtcagacgaggcacttcagcagatgcctgcc
tttcagggtcggatagatgttttgaaggaaattgggtgtatagattctgaccttgtagtg
caaattaaaggccgtgttgcttgtgaaatgaattctggggaggagttgatatgcacagag
tgtttgtttgagaatcaactggacgacctggaaccagaagaagctgtggcaataatgtct
gcctttgtttttcagcagaagaacacttctgaaccttctcttacaccaaagctgtctcaa
gccaaaaagagactgtatgacacggctataagactaggagagcttcaagcacagttcaaa
ttgccagttgatccccaggaatatgcccaagagaatcttaagtttggtcttgttgaagtc
gtctatgaatgggcaaagggcacaccatttgcagatatctgtgaacttactgatgttcct
gaaggtatgatagtaagaacaattgtcagattggacgaaacatgtcgtgaatttaggaac
gctgcagcaattatgggtaattcttcgatcttcaagaaaatggaaactgcttcgaatgca
atcaagcgtgacatcgtctttgctgctagcttgtacattacgggggtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (9)   
   Pfam (9)   
All databases (46)   

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