KEGG T00093: OB3034

Oceanobacillus iheyensis: OB3034

Entry

OB3034 CDS T00093

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

oih Oceanobacillus iheyensis

Pathway

oih03410	Base excision repair
oih03420	Nucleotide excision repair
oih03430	Mismatch repair
oih03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:oih03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:oih03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:oih03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:oih03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_primase_S Ephrin

Other DBs

NCBI-GI:

NCBI-GeneID:

JAMSTEC:

UniProt:

Position

3143990..3145777

AA seq 595 aa
MKPIASTEIPVGDEWIYEVKYDGFRCKLIWSVANKITLISKNKHNITKKFPEIIQWCENN
YEFFKTALPLEFDGELVILNHRYQANFAQIQIRGRLQSTDRIEKKANLRPATLMVFDLTK
LKGKKLYQSNLSLRKKYLDQLMQDIRGDGRIRCVESFTSVSKINEIVYAAKSEGVVAKRK
KSIYQKGKQHQSWFKIKNWRLIHGILTAYNPSNGYFTVSVLENNQPVHIGKCKHGLEKDA
SQTVQKLFQEQGEFKDGIYYLPPAITSTIHTLDLYDEELREPEFKHITSSIAYSECTLDK
LQLDMAQLPHSIDISNTDKYLWPNNYTKQDLLVYIREISPWMLPFLRQKALTIIRCPDGI
TKESFFQKNLPDYAPDFLSSTSAQENYIVCNHLRSIVWLANHGSIEYHIPFQRIGHVTPL
EIVFDLDPPDREHFKLAVHAANLLKHILDELELVSFVKTSGNKGLQVYIPIREGSMTYDE
TFLFTEAIAKTLEKSYPNDFTTERMKKNRHNRLYIDYVQHGKDKTLIAPYSPRMTKEGTV
STPLYWNEVNNELDPTHFTIGNVINRVREIGCPFANYHDMHEQQPMKKMLRLVRG

NT seq 1788 nt +upstreamnt +downstreamnt
atgaagccgatagcaagtacagaaattcctgttggtgatgagtggatatacgaggtgaag
tatgatgggtttcgttgcaaattaatatggtctgtagcaaataaaataaccttgatcagt
aaaaataagcataatatcacaaagaaatttccggaaattattcagtggtgtgaaaataat
tatgaattcttcaaaactgcattaccactcgagttcgatggggaactagtaatattaaat
caccggtaccaggcgaattttgctcaaatacaaatccgtggaagattacaaagtacagac
cgaattgaaaaaaaagcaaatcttagacctgcaacattgatggtattcgatttaaccaaa
ctaaaaggaaaaaaattatatcaaagcaatctatctttacggaagaaataccttgatcaa
ctcatgcaagatatacggggagatggaagaattagatgtgtcgaatcattcacttcagtc
tcaaaaattaatgaaattgtatatgcagctaaatctgaaggtgtcgtagctaaaagaaaa
aaaagcatataccaaaagggaaaacaacatcaaagttggtttaagattaaaaactggcga
ttaatacatggaattctaacagcatataacccaagtaacggctatttcacagttagtgta
ctggaaaataatcagcctgttcatattggaaagtgtaaacacggactagaaaaagatgct
tctcaaaccgtacaaaagcttttccaagaacaaggcgagttcaaggatggtatttactat
ctacctccagcaattacgagtacaatccacacattagatttatatgatgaggagctacga
gaacctgaatttaagcatattacatcatcaatagcttattcagaatgcacattggataaa
ttacaattagatatggcacaacttccccattcaattgacatatctaatacagataaatac
ctttggccaaataattatactaaacaggatttattagtttacattcgtgaaatatcacct
tggatgttaccttttttacggcaaaaagcattgactattattcgctgtccagatggaatt
acgaaggaatccttttttcaaaaaaacttgccagactatgccccagactttttatcatcc
acttctgctcaagagaactatattgtatgtaatcatctgagaagtatcgtctggttagca
aatcatggttcgattgaataccatattccctttcaacggattggccatgttacaccttta
gaaattgtatttgatttggatccgcccgatcgcgagcattttaaattagctgtacatgct
gcaaatctcctaaagcatatattagatgaattagagcttgtatcgtttgtgaaaacatca
ggaaataaaggactacaagtatatataccaatccgagaaggaagcatgacttacgatgag
acattcctatttacagaagctatcgcaaaaacgctcgaaaaatcatatccaaacgatttc
acaaccgaacgaatgaaaaagaatcgacataatcgactttatatcgattatgttcaacac
gggaaagataaaacattgattgcaccatattcaccaagaatgacgaaagaaggtactgta
tcaacaccactatattggaatgaagtaaataacgagttagatcctactcattttacaatt
ggtaatgttatcaatcgggtgcgtgagatcggctgcccttttgcaaactatcatgatatg
catgaacagcaacctatgaaaaagatgctccgcttagtccgtggataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JAMSTEC-OIH (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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