KEGG   Oryzias latipes (Japanese medaka): 101157901
Entry
101157901         CDS       T02443                                 
Symbol
pnn
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03013  Nucleocytoplasmic transport
ola03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    101157901 (pnn)
   03015 mRNA surveillance pathway
    101157901 (pnn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ola03019]
    101157901 (pnn)
   03041 Spliceosome [BR:ola03041]
    101157901 (pnn)
Messenger RNA biogenesis [BR:ola03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     101157901 (pnn)
Spliceosome [BR:ola03041]
 Complex C
  Other components
   EJC/TREX
    101157901 (pnn)
SSDB
Motif
Pfam: Pinin_SDK_N Pinin_SDK_memA Toxin_trans
Other DBs
NCBI-GeneID: 101157901
NCBI-ProteinID: XP_023807647
Position
22:19631399..19640417
AA seq 646 aa
MAVVVRSLQDQLEKAKESLKNVDDNIRKLTGRDPNESRPGQFRRLSGPMAGLSGGRGRGI
NLLRRSLSDMGTGGPPAKQRDIEGALLRLAGDQRARRDMRHDSDDDDDVKKPALQSSVVA
TSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVSSEKQKRRSEIEQKLE
VQAEAEKKKVENERRELFEERRAKQTELRLLEQKVELAQLQEEWTSHNNNLLKFIRTKTK
PHIFYLPGKMCSASQKLLEESTKKLNAVFEERREAFAEQLNKMESRPRRQINRDQDTNTA
ARMDHPAEGKPAGQAAKLTGKRSVAEMEEEEDEDEEGQREGDRIVIEGDNGEGNKEILEK
VEEEEGMEFREEGSEKKEAEEERKKEEKQASPKSEEMEVEIEAEKEEEMKEVKTDGRHGF
VDLQEKPVETQASKPRENRQEAADQPQPSLAVEGPPEQPPLTENAHAAQEAQTSSTADVQ
DSANENRAEELKSTEAPQPVPNSQEAPVVSPKKDDGDGDRGRKKAKSSRRRSKSSSSSSS
GSSSDSSSSGSSSSSSGSSRSSSSSSSSSNSSHSRGRDGGNHKRRPSEKGTDKKREERKS
TKGGRSSRGKDSKESKEKKRRNEEGRGRSSRSEGEHKDRDGKDKRR
NT seq 1941 nt   +upstreamnt  +downstreamnt
atggcggtggttgtgcggagtttgcaagatcagctcgaaaaagccaaagaaagcttgaaa
aatgtggacgataatattcgaaaacttacgggccgagatccaaacgagtcgagaccgggc
cagttccgtcggctcagcggcccaatggcaggcctcagcggaggtagaggcagaggaatc
aacctgctcaggcgcagtctctcggacatgggaactggcggcccccctgccaagcaaagg
gacatcgaaggagccttgctgaggctggcaggagaccagagggccaggagagacatgcgc
cacgacagcgacgatgacgatgatgtcaaaaagccagcgttgcagtcctctgttgtagct
acctccaaagagagaacacgccgagatcttattcaagatcaaaccatggatgagaagggc
aaacagagaaatcggcgcatgtttggtctgctgatgggtacgctgcaaaaatttaagcag
gagtccaacgtatcttcagaaaagcaaaaacgccgttctgagattgagcagaaactggaa
gttcaggctgaagctgagaagaagaaagtagagaatgaaaggagagagctgtttgaggag
agaagagccaagcagacagagctgagacttctggaacaaaaagtggaattagctcagctg
caagaggagtggaccagccacaacaacaacctgttgaaattcattcgcacaaagaccaag
cctcacatcttctaccttcctggaaaaatgtgctccgcatcacagaaactcctcgaagag
tccaccaagaaactaaatgctgtgtttgaggaaaggcgtgaagcttttgctgagcaactc
aacaagatggagtcacgtccccggcgccagataaaccgcgaccaggacaccaacactgcc
gcaaggatggaccatccggcggagggtaagccagcaggtcaggcagccaagttgacaggt
aaaaggagtgtcgcagagatggaggaggaggaagatgaggatgaggaaggtcagagggaa
ggagatagaattgtgatagaaggggataatggggagggaaacaaggaaatattagaaaaa
gtagaagaggaggaagggatggagtttagagaggaaggaagtgagaaaaaagaagctgag
gaggagaggaagaaagaggagaagcaagcaagcccaaagtcagaggaaatggaggtggaa
atagaagcagagaaggaagaggagatgaaggaagtcaaaacagatggcagacacgggttt
gtagacctacaagagaaacctgtagaaacccaggcttctaaaccgagggaaaaccgccaa
gaagcagcagatcagccccaacccagcctcgctgtagagggtccaccagagcagccccct
ctgacagagaacgcacatgcagcccaagaagcccagacatcatccacagctgatgtccag
gactctgccaatgagaatcgggcagaggagctcaaatcaactgaggccccgcaaccggtg
cccaattcccaagaggcccctgtcgtcagccctaaaaaagatgatggtgatggtgacagg
gggaggaagaaggccaagtcaagtagacgccgcagtaaaagctcctcctcgtcctcctcc
gggtcctcgtcagactcctcttcaagtggaagttcctcctcttcttctggatccagccgc
tcctcgtcttcatcatcttcgtcctctaacagcagtcacagccgcggtagagatggtggc
aaccacaagaggcggccatcagagaaaggtacagacaagaagagggaggagaggaagagc
accaagggaggaaggagtagtagaggaaaggactccaaagaatcaaaggagaagaagagg
aggaacgaagaaggcagaggcaggtcttcacggagcgaaggggaacataaagatagagat
gggaaggacaagagacgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (54)   

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