KEGG   Oryzias latipes (Japanese medaka): 101158787
Entry
101158787         CDS       T02443                                 
Symbol
polr2i
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03020  RNA polymerase
ola03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    101158787 (polr2i)
  09124 Replication and repair
   03420 Nucleotide excision repair
    101158787 (polr2i)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ola03021]
    101158787 (polr2i)
   03400 DNA repair and recombination proteins [BR:ola03400]
    101158787 (polr2i)
Transcription machinery [BR:ola03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     101158787 (polr2i)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      101158787 (polr2i)
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C Ogr_Delta Zn_ribbon_recom TF_Zn_Ribbon DZR Zn_Tnp_IS1595 Lar_restr_allev zf-C4_Topoisom GpA_ATPase
Other DBs
NCBI-GeneID: 101158787
NCBI-ProteinID: XP_004075906
UniProt: H2MDN2
Position
13:complement(25551624..25556210)
AA seq 126 aa
MDIDGGAYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKIT
HEVDELTQIIADVAQDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHC
GHRWTE
NT seq 381 nt   +upstreamnt  +downstreamnt
atggatatcgacggcggtgcatatgagcctggatttgttgggatacgattctgtcaggaa
tgtaataacatgttatatccaaaagaagataaggagaaccgcatcctactgtatgcttgc
aggaactgcgactaccagcaagaggcagacaacagctgcatctatgtgaacaagatcacc
catgaggttgatgaactgacgcaaatcattgctgatgttgctcaggatccaacgctgccg
agaacagaggatcatccctgtccgaaatgtggccacaaggaggcggtgttcttccagtca
cacagtatgaaggctgaggatgcgatgcgattgtactatgtctgcacagcccctcactgt
ggacaccgctggacagagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (52)   

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