KEGG   Oryzias latipes (Japanese medaka): 101160421
Entry
101160421         CDS       T02443                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101160421
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ola03019]
    101160421
Enzymes [BR:ola01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     101160421
Messenger RNA biogenesis [BR:ola03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101160421
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     101160421
SSDB
Motif
Pfam: Exo_endo_phos LRR_4 LRR_8 LRR_1 LRR_6
Other DBs
NCBI-GeneID: 101160421
NCBI-ProteinID: XP_023814998
Position
10:16542366..16560774
AA seq 559 aa
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSSALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLSYLLDNLAGAIKRIPTEQPPARSWISLQEP
ERTRSSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIIQEIMGCNSDIISLQE
VETEQYYNFFLPELKDQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMELSSGKSLHGMEKQLLLVANA
HMHWDPDYSDVKLVQTMMFLSEVKSIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDS
GVVEYLSTGGVDCTHKDFKELRYSDCLTKFNCNGKNSTSNGRITHGFKLKSAYENGLMPY
TNYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVTGCPHPHIPSDHFSLFAQLE
LLLPNIPSQVNGLHLPARR
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgcccaaggaaaaatatgacccgccggatccgaggcggatgtacacaattatgtccagc
gaggaggcagcaaatgggaagaagtcatactgggctgagctggaaatcagtggccgagta
aggagtctcagctcagccctgtggtccctcacccacctcactgccctacacctcagtgac
aactctctgtcacggatcccgccagacattgccaaattacacaacctggtgtacctggat
ctctcatccaataagatcaggagcctgccagcagagctcggcaacatggtgtctctcagg
gaattgcttttaaataacaaccagttgcgggttctgccatttgagttggggaaacttttt
cagttacaaactcttgggttgaaaggaaacccacttgcacaagaaataatgagcctctac
caggaacccgatggcacacgaagactgctcagctacttgttagacaatctggcaggtgct
attaaacgcataccaacagagcagcctccagcccggtcatggatctcactccaggaacct
gaacgaacgcgctcctcagctttgttctctgtgatgtgctacaatgtgctgtgcgataag
tacgccacccgacagctgtacggctactgcccctcctgggctctaaactgggagtacagg
aagaaatccatcatacaggaaattatgggctgcaactcagacatcatcagcttgcaggaa
gttgagacggagcaatactacaacttcttcttgcctgagctgaaagatcaaggatatgac
gggttcttcagtccaaaatcccgagcgcgaacgatgtcggagtcggaccgtaaacatgtg
gacggctgtgctattttttacaaaacagagaaattcagcgccgtgcaaaaacacacggta
gagttcaaccagctggccatggctaactccgagggctcagaggccatgctcaacagggtg
atgacaaaggacaacattggagtcgctgtactgctcgaagtccgcaaagagatgatggag
ctctcatctggtaagtcgctccacggcatggagaagcagcttcttctggtggccaacgcc
cacatgcactgggaccccgactactctgacgtcaagctggtccagaccatgatgttcctg
tcggaggtgaagagcatagtggacaaggccacgcgcagcctcaagttgtcatctgtctct
ggtgagaccaacgcaattccactggtgctgtgtgctgacctcaactctttgccagactct
ggtgtagtggaatacctgagtactggtggagtggactgcacccataaggacttcaaagag
ctccgttatagtgactgcctgaccaaatttaactgcaacggcaagaacagcacgtcgaat
ggcaggatcacccacggcttcaagctgaagagcgcctatgagaatggcctgatgccttat
accaactacacctttgactttaagggtgtcatcgactacattttctactccaagcctcac
ctgaacgtgctgggaatcctgggaccgctggatccccactggcttgtagaaaacaatgtc
accggctgcccccacccccacatcccctccgaccacttctccctctttgctcaactggag
ttgctcctgcccaacataccctcccaggtcaatgggcttcacctgcctgcgcgcaggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system