KEGG   Oryzias latipes (Japanese medaka): 101162381
Entry
101162381         CDS       T02443                                 
Symbol
snrpd1
Name
(RefSeq) small nuclear ribonucleoprotein Sm D1
  KO
K11087  small nuclear ribonucleoprotein D1
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101162381 (snrpd1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ola03041]
    101162381 (snrpd1)
   03032 DNA replication proteins [BR:ola03032]
    101162381 (snrpd1)
Spliceosome [BR:ola03041]
 Complex A
  U1 snRNP components
   Sm proteins
    101162381 (snrpd1)
  U2 snRNP components
    101162381 (snrpd1)
 Complex B
  U1 snRNP components
    101162381 (snrpd1)
  U4/U6.U5 tri-snRNP components
    101162381 (snrpd1)
 Complex C
  U2 snRNP components
    101162381 (snrpd1)
DNA replication proteins [BR:ola03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     101162381 (snrpd1)
SSDB
Motif
Pfam: LSM Gemin7 Hfq SM-ATX API5
Other DBs
NCBI-GeneID: 101162381
NCBI-ProteinID: XP_004074261
UniProt: A0A3P9JCD8
Position
11:complement(22965558..22968306)
AA seq 119 aa
MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSI
RGNNIRYFILPDSLPLDTLLVDIEPKIKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR
NT seq 360 nt   +upstreamnt  +downstreamnt
atgaaactagtcaggtttttgatgaagctcagtcatgagaccgttaccattgaactgaag
aatggcactcaggtccatggcaccatcacaggtgttgatgtaagcatgaacacacacttg
aaggcggtgaaaatgaccctaaagaacagggaacccactcagctggagtccctgagtatc
cgaggcaacaacattcgctacttcatcctgccagacagtcttccactggacaccttgctg
gtcgacattgaaccaaagatcaagtccaagaagagagaagcagttgctggtagggggcga
ggcagaggacggggccgtggcagaggaagaggacgagggcgaggtggaccacggagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (46)   

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