KEGG   Oryzias latipes (Japanese medaka): 101166094
Entry
101166094         CDS       T02443                                 
Symbol
itga4
Name
(RefSeq) integrin alpha-4
  KO
K06483  integrin alpha 4
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola04510  Focal adhesion
ola04512  ECM-receptor interaction
ola04514  Cell adhesion molecules
ola04672  Intestinal immune network for IgA production
ola04810  Regulation of actin cytoskeleton
ola04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ola00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    101166094 (itga4)
   04514 Cell adhesion molecules
    101166094 (itga4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    101166094 (itga4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101166094 (itga4)
   04810 Regulation of actin cytoskeleton
    101166094 (itga4)
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    101166094 (itga4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ola04147]
    101166094 (itga4)
   04515 Cell adhesion molecules [BR:ola04515]
    101166094 (itga4)
   04090 CD molecules [BR:ola04090]
    101166094 (itga4)
Exosome [BR:ola04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   101166094 (itga4)
  Exosomal proteins of other cancer cells
   101166094 (itga4)
Cell adhesion molecules [BR:ola04515]
 Integrins
  Integrin alpha subunits
   101166094 (itga4)
CD molecules [BR:ola04090]
 Proteins
  101166094 (itga4)
SSDB
Motif
Pfam: Integrin_A_Ig_1 FG-GAP Integrin_A_Ig_2 Integrin_A_Ig_3 FG-GAP_3 FG-GAP_2 DUF11 Integrin_alpha
Other DBs
NCBI-GeneID: 101166094
NCBI-ProteinID: XP_004081602
Position
21:complement(6798396..6827968)
AA seq 1024 aa
MCSSGESMRLLCSLVLVLVPLSAGYSLDVEHSLEFSGPSSSWFGYSVLLHRHGRQTWLVA
GAPVANGSSSLPVRSPGGVYRCNITPEPRTCKRMHTEVSSCGKTCEGESDHQWLGVSLSR
QPGEEGGHVLACAHRWKNIFYSTKDFQSNKLPNGVCFSFSSDLETSRHYIPCYTDHQRKF
GENYASCQAGISSSMTEDLVIMGAPGTSYWTGSVIVYNTSSRQISAYGNDETGAVNFGSY
LGYSVGAGHFLSPSSEEVVGGAPQYNQKGKVFIFTIDNSRLRIVFELPGKEFGSYFGSSV
SVVDLNADGLSDLLVGAPMATSNTREEGKVHVYINEGQAKLVEAEFQLTGSSSYAARFGQ
SIANLGDLDDDGYPDVAVGAPQEDDLRGAVYIYNGRKEGISAAPSQRITGSSLGRDLMMF
GQSLSSGIDVDNNKYKDVAVGAFLSDSAVILRARPVIQVKASLTLPDQIDQQVALCRDRG
TPTVCFNVTICFNATSKHFKGSIDLQYNLTSDLIHKSSFPHRFYFHGNGSLNSTKGDVKT
RHGRLTCTTHIAYQRRDVKDIYTPVQFEVSYGLRETTQKHVVKTFPPLKPILQQSAGQRH
TITNQTRFARSCSLGNCSTNMQLSSHLVLPDQQDFVALGSAQTIILKTSLLNSGDDAFLP
RLTLRFPDNIHYVKVLQNQDNLISCDVMKEDNSTDVSLTCTVSSLVLPAGSQMNISFLFD
VNHNSTPGDVLIQMNTSSDNYEMEKYLHDNAMSLSFPLKYGVNVNIHGFVSPTSFLFGDE
DTIPAECYSEKLNYTFKVLNSGPSRSVDTVVDIRLPKILSPHRHKLQKVISLKSSHGKCS
ISGKTISVFEDCDVPHASFIQKLISFFSPTSTRTLFCGRGDELCEHLICRLGNLDVGRDA
TILLEVNLNPAVLLQEPGRHGIMALESTALMSFPREDHHTVLMRGLPFTQVSVEAVFTQK
LTTAVQIFIIAVSLVLGLTILAALIWCLWKAGFFKRNFQKKEEEEFNRDSWDYVPKLNKR
GSTT
NT seq 3075 nt   +upstreamnt  +downstreamnt
atgtgctcatcaggggagagcatgcggttgctctgcagcctggttctggtcctggttcct
ctttctgcaggatacagtctggatgtggagcacagtttagagttcagcggcccctcctct
tcctggtttgggtactctgtgctgctgcatcgccacggaagacaaacctggctggtggca
ggagctccggtggcaaacgggtcttccagtctgccagttcgatccccaggaggtgtttac
cgctgcaacatcacacctgagcctcggacttgcaaacgcatgcatactgaagtgtctagc
tgtgggaagacctgtgagggggaaagtgatcaccagtggcttggagtcagtctgtctaga
caacctggagaagaaggcggacatgtgctggcgtgtgctcaccgatggaagaacatcttc
tactcaactaaagattttcaaagcaataaactgcccaatggagtttgtttttccttcagc
agtgacttagaaacatcccggcactacatcccatgctacacagaccatcaaaggaagttt
ggtgagaattatgcatcgtgtcaggcgggtatttccagttccatgactgaggatctggtc
atcatgggggcaccgggaacgtcttattggacaggttctgttattgtctacaacacatcc
agtcgacagatttcagcctatgggaatgatgagactggagctgtcaactttgggagctac
ctgggttactctgttggagctggtcactttctcagtccttcatctgaggaggtggtgggc
ggagctccacaatacaaccagaaaggcaaggtcttcatatttacaatagacaacagcagg
ctgcgtattgtgtttgaattacctggtaaagagtttggatcttattttggctccagtgtc
agcgtggtggatctcaacgctgatgggctttcagatcttttggttggggctcctatggca
acaagcaacaccagagaggagggaaaagtacatgtgtacatcaacgagggacaggcaaag
ctggtggaggcagagttccagctgactggcagcagttcttacgctgcccgatttggacag
tccattgccaacctgggagacttagatgatgacggctacccagatgtggcggttggtgcc
ccacaggaagacgacctcagaggagcagtctacatttacaatggcaggaaggagggcatt
tcagcggcgccatcgcagaggatcactggatcctctcttgggcgtgacttgatgatgttt
ggacagtcactgagctctggcattgacgttgacaacaacaagtacaaagatgtggcggtc
ggtgcctttctctcagattctgctgtaattctcagggcccgccctgttatccaggtgaag
gcatctttaactctgcctgaccagattgaccaacaggtggcgctgtgccgcgaccgtggc
actccgactgtctgcttcaatgtcaccatctgcttcaatgctacatctaaacacttcaaa
ggatccatagatctgcagtataacttgacctctgaccttatccacaaatcctcctttcct
catcgcttctatttccacggtaacggctcattaaatagcacaaagggagacgtgaaaaca
cgacacggccgtctgacgtgtacgacgcacatcgcatatcaaaggagagatgtgaaggac
atttatactccagttcagtttgaagtttcctatggtctcagagaaacgactcaaaaacat
gtcgtcaaaacttttcctccattgaaacccattttgcagcaaagtgcaggacaacgccac
accatcaccaaccagactcggtttgcccgttcctgctctctggggaactgttcaacaaac
atgcagctgtcgagtcatttagtgctacctgatcagcaggattttgttgctctgggctct
gcacaaacaatcatcctgaaaacgtctctgctgaattctggagacgacgctttcctgcct
cgactgacactgcgattccccgacaacatccactacgtcaaagtgctgcagaatcaagac
aacctgatcagttgtgatgtgatgaaggaagacaactctacagacgtgagccttacctgt
acggtttccagccttgttctgcctgccggctctcagatgaatatcagttttctgtttgat
gtgaatcacaacagcacgcctggggacgtcctcattcaaatgaacaccagcagtgacaat
tatgagatggagaagtatctccatgacaacgccatgagcctcagctttcctctcaaatat
ggagtcaatgtcaacatccacggttttgtatctccaacttcctttttatttggggatgaa
gacacaattccagctgagtgctactctgaaaaactcaactacacattcaaggtgttaaat
tctggtcccagcagatcagtggacaccgtggttgacatcagactgccaaagatcctttca
cctcatcgacacaaactgcagaaggtgatcagcttgaagtcgtcacatggtaagtgttcg
atcagcggcaaaaccatttcggtcttcgaggactgcgacgtccctcatgcttctttcatc
cagaagctcatctccttcttctcgcctacctccacgcgcacattgttctgtggccgtgga
gatgaactgtgtgaacacttgatatgtcgcctcggtaacctagatgtggggcgagatgct
accatcctgctggaggtcaacctgaaccctgctgtgctgctccaagaaccgggccgtcac
ggcatcatggcgttggagagcactgcgctgatgtcctttccaagagaagatcatcacact
gtcctcatgcggggtctccctttcactcaggtgtcggtggaagccgtctttacccagaag
ctcaccacagcggttcaaatcttcatcatcgctgtcagtttagttttaggactcacaatc
ctcgctgctctcatctggtgtctgtggaaggctggtttctttaagaggaacttccagaag
aaggaggaagaggagttcaacagagacagctgggattatgttcctaaacttaacaaaagg
ggaagcaccacctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (52)   

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