KEGG   Oryzias latipes (Japanese medaka): 101171772
Entry
101171772         CDS       T02443                                 
Symbol
srf
Name
(RefSeq) serum response factor isoform X1
  KO
K04378  serum response factor
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola04010  MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:ola00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    101171772 (srf)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ola03000]
    101171772 (srf)
Transcription factors [BR:ola03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   MADS-box responders to external signals
    101171772 (srf)
SSDB
Motif
Pfam: SRF-TF
Other DBs
NCBI-GeneID: 101171772
NCBI-ProteinID: XP_011483048
Position
15:29043730..29061865
AA seq 590 aa
MLPSQAGSVPSGNGSASGKGSTGHSSGVVGGGIRPVLVRPGLSDGAGAAGRHAGDRDAVG
MLGANGPGGSRAARPGNGTGGNPLQAAVPGHMVGLNAGVVLPMGARFDPERVCSGSDNDS
ESGDDDDPVGSLGDSRRGVKRERGEMMEAAAAGQEAGVTPGDYGMVSGGVAGAKPGKKTR
GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK
LQPMITSETGKALIQTCLNSPDSPPRSDPSMDQRMSATGFEETDLTYQVSESESMGDTKE
ALKPTFTVANIPGSTSTPAVPTTSTTMQVSSGPSFPITNYMAPASASGNVSANGTVLKTA
PAGVMQLPSGFTFMPAGTPLPPGTPTIPLSQLQQHSLALQGQHGQALAAPPLQQGQQAVF
RFPAAVSLTGPGIPQQLQAIQVHQNTQPTSNSDSSPDISHTSTNSTTTVSLPATIVTSSV
PTSVAGHMMYPSPHTVMYASTPALADGGLAVLNAFSQGTSAMQVSHAQAQDAGAVSQVFL
TAPPGTVQIPVSAVQLHPMVIGQQSSGGSSSNLTELQVVNLDAAPSSKSD
NT seq 1773 nt   +upstreamnt  +downstreamnt
atgttacccagccaggctggatcggtaccatctggaaacgggtccgcgtccggcaagggc
agcaccggtcacagttcgggggttgtcggcggcgggattcgccccgtcctggtccgaccg
gggctaagcgacggcgcgggcgctgcggggcgacacgccggggacagggacgcggttggg
atgctcggagccaacggtccaggcggctcgagggccgcgagaccgggaaacgggaccgga
gggaaccccctgcaggctgccgtaccgggacacatggtggggctgaacgcgggcgtcgtg
ctgcccatgggggcccggttcgacccggagcgggtgtgcagcggctccgacaacgactct
gagtccggggacgacgacgacccggtggggtcactcggggacagcaggagaggggtgaag
cgggagaggggggagatgatggaggctgcggcggcggggcaggaggcgggagtcaccccc
ggagattacggcatggtgtccgggggagtcgccggggcaaagcccgggaagaagacccgg
gggcgcgtgaagattaagatggagtttatagacaacaagttacggaggtacacgaccttc
agcaagaggaagacgggcatcatgaagaaggcgtatgaactgtccaccctcacaggaacc
caggttctgctgctggtggccagtgaaacgggtcacgtctacacctttgccacccgcaag
cttcagcccatgatcaccagcgaaacgggcaaagccttgatccagacgtgcctgaactcc
ccggactcgccgcctcggtccgacccctccatggaccagcggatgagcgccacgggcttc
gaggagacggatcttacctaccaggtgtcggagtcggagagcatgggcgacacgaaggaa
gccctgaagcctacgttcaccgtggccaacataccgggcagcacgagcacccccgccgtg
cccaccacctccaccaccatgcaggtgagcagcgggccgtccttccccatcaccaactac
atggcgccggcgtcggccagcggcaacgtcagcgccaacgggaccgtcctgaaaactgcc
cccgcgggagtcatgcaactgcccagcggcttcaccttcatgcctgccggcactcctctc
ccccccggcacccccaccattcctctgagccagctgcagcagcattccctggcgctgcag
gggcagcatggccaggcgctggccgccccgccgctgcagcagggacagcaggctgtcttc
cgcttccctgctgctgtctccctcacaggacccggcattccccagcagctccaggctatc
caggtccaccagaacacgcagcccacctccaacagcgacagcagccccgacatctcccac
acctccaccaactccaccacaaccgtaagtctcccagcaaccatcgtcacctcgtcggtg
ccgacgtctgtggcgggtcacatgatgtaccccagccctcacacggtcatgtacgcgtcc
acgccggcgctggctgacggagggctggccgtgctcaacgccttctcccaggggacctcc
gccatgcaggtttcccacgcacaagcccaggacgcgggtgcggtctctcaggtgttcctc
actgcacctccaggaacggtgcagatccccgtctcggctgtgcagctacacccaatggtg
attggccagcagtccagcggcggcagcagcagtaacctgacggagctccaggtggtcaac
ctggatgcggcgccgagctctaagagcgactga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (1)   
   Pfam (1)   
All databases (25)   

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