KEGG   Oryzias latipes (Japanese medaka): 101173051
Entry
101173051         CDS       T02443                                 
Symbol
usp4
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 4
  KO
K11835  ubiquitin carboxyl-terminal hydrolase 4/11 [EC:3.4.19.12]
Organism
ola  Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:ola00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:ola01002]
    101173051 (usp4)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ola04121]
    101173051 (usp4)
Enzymes [BR:ola01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     101173051 (usp4)
Peptidases and inhibitors [BR:ola01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   101173051 (usp4)
Ubiquitin system [BR:ola04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    101173051 (usp4)
SSDB
Motif
Pfam: UCH Ubiquitin_3 DUSP UCH_1 USP7_C2 USP7_ICP0_bdg
Other DBs
NCBI-GeneID: 101173051
NCBI-ProteinID: XP_004068528
Position
5:complement(3079548..3092241)
AA seq 1037 aa
MSEGEGGLLFGPPMGGRTLLVPQALVLVIARALYRYISCMMAEGGGPESGSAADSDSEPV
TAQIPTPSSESQKQTIGSLLKTPLKKGDEWFLIDSRWFKQWKKYVGFDSWDMYNVGERSL
YPGPIDNSGLFSDQETQALKEHLIDELDYVLVPTEAWNKLVSWYGCLEGQRPIVRKVVEH
GMFVKHCKVEVYLLELNLCENDNMDNVVTRHFSKADTIDTIEKEMRTLFEIPSEKETRLW
NKYMSNTYEQLNKPDSTVQDAGLFQGQVLVIERRNEDGTWPRQASHPKSSTTPSRNFSTS
PKLSSNSSMSISPTATNGDSSCSPGYTLNNSSTSSSNRLGSYNSYNSYSYRESQAQPGLC
GLSNLGNTCFMNSALQCLSNAPPLTEYFLDDQYEAEINRENPLGMRGEIAEAYADLVKQM
WLSRSSYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRD
AEGREDEIVAKEAWKNHRLRNDSVIVDIFHGLFKSTLVCPVCSKVSVTFDPFCYLTLPLP
MKKDRTMEVFLVRSDPQSKPTQYRAVVPKLGTVADLCSALSKLCGIPPENMVVADVYNHR
FHKIYRRDDGLNQIMEKDDIFVYEVQEEDSERMNLPVYLRERQSKHAASSSSTLLFGQPL
LITVPRHNLTADVLYDKILERIGRYVKPSQSPNSESKASASATVTNCNQAPESSTASCLG
GCSSPLSDGASCSASSSNDSNHSGSGNKANGVYDGEEEAMDHQVSPEPENGLSEEEEETS
DLENGSKGQKTKLFTFSVVNFYGTANISSLPCEGNVLKLNPHSTIAIDWDTESKKLFYDE
QEAEAYEKHESMLQPQKKKTTVALRDCIELFTTMETLGEHDPWYCPTCKKHQQATKKFDL
WSLPRILVVHLKRFSYNRCWRDKLDTVVDFPIRDLNMSEFVCDPKASPYIYDLIAVSNHY
GGMGGGHYTAYAKNKLDGKWYYFDDSSVSSATDDQIVTKAAYVLFYQRRDEDAPSKSPPS
ASLGASPEAADDRMDTN
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgtcagagggagagggaggtttgttattcgggccgcctatgggcggaagaacgctcctg
gttccccaggcgctcgtgcttgtcatagcgcgtgcactctaccggtacatcagttgcatg
atggccgaaggaggcggacccgagtcgggtagcgcggcggactccgactcggagccggta
accgcacagataccgaccccttcatccgaaagtcagaagcaaaccattggatcacttctg
aaaacacctttgaaaaagggcgacgagtggtttcttatagacagtcggtggttcaaacag
tggaaaaagtatgtgggatttgacagttgggatatgtacaacgttggcgaacgcagcctc
tatccaggaccaattgataactcggggctgttctcagaccaagagacccaagctcttaaa
gagcacctcatagatgagctggactatgttttagtgcccactgaggcgtggaataagctt
gtcagctggtatggctgtctggaaggccaaagacccatcgtcaggaaggtggttgagcat
ggcatgtttgttaagcactgtaaagtggaagtctatttgctggagctcaacttgtgtgag
aatgacaacatggacaacgttgtaacacgccattttagcaaagcagatactatagacact
atagagaaggagatgcggacgttgtttgaaatcccatcagagaaagagaccagactctgg
aacaaatacatgagcaacacctatgagcaactgaacaagccagacagcactgtacaggac
gccgggctttttcagggacaggtgcttgtgatcgagcgcagaaatgaggacggcacttgg
cccagacaggcttcacaccccaaatccagtacaacgccatccagaaatttctctacctcc
ccaaagctgtcttcaaattcgtccatgagtatatcaccaactgcaaccaatggagacagc
agctgtagccctggatacacactaaacaacagcagcacttcctctagcaacaggttgggg
agctacaactcgtataactcgtacagctacagagaatcccaagcacagcctggcctttgc
ggtctcagtaatttggggaacacatgcttcatgaactctgctctccagtgcctgagcaat
gcacctcccctcacagagtacttcctggatgaccagtacgaggcagagattaaccgtgag
aatccgctgggaatgaggggcgagatcgccgaggcctacgcagacctcgtaaagcagatg
tggctgagccgcagcagttatgtggcaccacggacgtttaaaacgcaggttgggcgattt
gctcctcagttttcagggtaccagcagcaagactcgcaagagttgctggcctttttgctg
gacggactccatgaagatctgaaccgtgtcaaaaagaagccttacctcgccctaagagat
gccgagggccgtgaagacgagattgttgccaaggaggcctggaaaaaccaccgcttacgc
aacgactctgtaatagttgatattttccacggactctttaaatccacgttggtgtgtccg
gtgtgctccaaggtgtcggtcacctttgacccgttctgctacctcacattgcctctgcct
atgaagaaggaccggaccatggaggtgttcctggttcggtcagatcctcagtccaaacct
actcaatatcgagcggtcgtccccaaactgggcactgtggcagacctttgcagtgccttg
tccaaactctgtggaatccctccggaaaatatggttgtggctgacgtttacaatcatagg
ttccacaaaatttacagacgagacgacggcctcaaccaaatcatggaaaaggacgacata
tttgtgtacgaggtgcaggaggaggacagtgaacggatgaatttgcctgtatacttaagg
gagcgccagtccaagcatgctgcaagctccagtagcaccttgctgtttggccagccttta
ctcatcaccgttcccagacacaacctcacagcagacgtcttatacgacaagatactggag
aggattgggcgctatgtaaagccttcccagagtcccaacagtgaaagtaaggcatcagcc
tctgcaactgtgaccaactgcaaccaagcccctgaaagctccacggcatcttgtctgggt
gggtgcagcagccccttgtcggatggagcctcctgcagtgccagctccagcaatgacagc
aaccattcagggagcggcaacaaagccaacggggtctatgatggtgaagaggaggccatg
gaccaccaggtgagtcctgaacctgagaatggtctgtctgaagaagaggaggaaacatct
gacttggaaaatggctcaaagggccagaagacaaagctattcactttcagcgtagtcaac
ttttacggaacagccaacatcagctcgctaccttgtgaaggaaatgtcctcaaactcaat
cctcattccaccatagccatcgactgggacacggagtcaaagaagctgttctacgacgag
caggaagcagaggcctatgaaaagcacgagagcatgctgcagccccagaaaaagaaaacc
accgtggctttgagggattgcattgagctcttcaccaccatggagacgctgggagaacac
gacccctggtattgtccaacgtgtaagaaacaccaacaagccacaaaaaagtttgacctg
tggtctttgcctcgcattctggtcgttcatctgaagcgtttctcctacaaccgatgctgg
agggacaagctggacacggtggtggactttcctattagagatctaaacatgtccgagttt
gtttgtgacccaaaggcgagcccctacatctatgacctcattgctgtgtccaaccactat
ggaggaatgggaggaggccactacaccgcctacgccaagaataaactggacggaaagtgg
tattattttgacgacagcagcgtctcctcggccacagacgaccagattgtgactaaagcg
gcctacgtgctcttctatcagcgcagagacgaggacgctccctccaaaagtccgccttcg
gcgtcgttgggagcatctccggaggccgccgacgaccgcatggacacaaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (48)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (62)   

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