KEGG   Oryzias latipes (Japanese medaka): 101175445
Entry
101175445         CDS       T02443                                 
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
  KO
K12647  interferon-induced helicase C domain-containing protein 1 [EC:5.6.2.6]
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola04622  RIG-I-like receptor signaling pathway
ola05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ola00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    101175445 (ifih1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    101175445 (ifih1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:ola04054]
    101175445 (ifih1)
Enzymes [BR:ola01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101175445 (ifih1)
Pattern recognition receptors [BR:ola04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   101175445 (ifih1)
SSDB
Motif
Pfam: CARD_2 RIG-I_C-RD RIG-I_C DEAD Helicase_C ResIII SWI2_SNF2 CARD SNF2-rel_dom AAA_22
Other DBs
NCBI-GeneID: 101175445
NCBI-ProteinID: XP_004081944
UniProt: H2MQX3
Position
21:complement(21087601..21100578)
AA seq 974 aa
MASEADEGHEHLIDGVRFKLKGIIAVDQVLPYLHFLDQEPKDQIKQKLITDGDRAAADLL
IDTVIKGPHNEGWFRAFIDALSHGGSELAADYLTKPPRPEEEAENDMYVELIRLLAPSLA
GMKTTVVCELCFSDELLTADDKERILAETNNYGNGRGAQELLKRIIRRRPPWFSEFLQVL
LRAEERAVYCELTGRLPGKDEEPPSPKHEPAQSEPAGEESPQAKESNGIQEIQEESADLY
SDPDLLQNEERSQPDGSASAAAGEPSSPEKAEISLWDYQMEVAKPALEGKNIIICLPTGS
GKTRVAVYITKEHLDLRRAEGKLGKVVVLVNKVPLVEQHYTKEFTPYLKHSYKVERVSGD
SQLKISFAKIVQRNDIIICTAQILENYLERATSGVDEGVKLSDLSLMIIDECHHTQKGEA
YNHIMMRYLKQKHKNKKLKKEQKEIVPLPQILGLTASPGVGRAARLEKAKEHILQICANL
DASQIMTRSLRDFKREPRKSIQTVEDKKQDPFGDVIKRIMHEIHRHAELNPTGDLGTQVY
EQWSVQKERQAAREGDQKVRVCAEYLRQYNNGLILRNTIRMHDALSLLNNYYEEQYKKKS
APDEEQNIQITDTERFLFNLFKENKKELESLAKNPEYENESLSKLRTEILKEFSSRKQAR
GIIFTKTRHSAITLNQWIQENPKFDDIGIKPAYVIGGGDQSDVKPMTAAEQKDVLKKFST
GEVNLLVATTVAEEGLDIPACNFVIRYGHVTNEIAMIQSQGRGRAEDSTYTVVDVKNSGV
AEKECVNEHREDMMHKAIEKIKALSQADYDKQITDYQLQAIMENRVRQNRQNKKVMKNVN
PAAVKFSCRHCNKQVCTGEDISIIEDMHRVNATVDFRKLFIQRENSSLQERLVDYETNGI
IACKDCGQPWGSMMMFRGIELPCLLVKNFVVNINTENISKCSKWSDIPVKFPAFDYNEYA
IRVIEIDSDDEETN
NT seq 2925 nt   +upstreamnt  +downstreamnt
atggcatctgaagcagatgaaggacacgagcaccttattgacggcgtcaggttcaagctg
aaaggcataatagccgtggaccaggttttgccttatttacactttctcgaccaggagcct
aaagatcagatcaagcagaagctgatcaccgacggtgacagggcagcggcagatttgctc
atagacactgtgattaaagggcctcataatgaaggatggttccgggccttcattgacgcc
ttgtctcacggaggctcggagctcgcggccgattacttaacgaaacctccgaggccagaa
gaggaggctgagaatgacatgtacgtggagctgatccggcttctggctcccagtctggcg
gggatgaagacaacagtcgtctgtgaactctgtttttctgatgagctgctcaccgccgac
gataaagagagaattttagcggagactaacaactacggaaacgggaggggagcccaagaa
cttctcaaaaggatcataagacgacgaccgccttggttctcggagttccttcaggttctg
ctgagagctgaggaacgtgcagtgtactgcgagttgactggtagactaccaggaaaagat
gaggagcctccttcaccgaaacatgagcctgcacagagtgaacctgcaggagaagagagt
cctcaagcaaaagaaagtaatggaatccaggagattcaggaagaatctgcagatctctat
tcagatcctgacctgctgcagaatgaggagcgttcccagccagatggaagcgcctctgct
gctgcaggagagcccagctccccagaaaaagctgagatctctctttgggattatcagatg
gaagtcgcaaaacctgccttggagggaaaaaacatcatcatatgcctcccgacaggaagt
ggtaaaaccagagtcgcggtctacattaccaaagaacatctggacctcaggagggcggag
gggaaattagggaaggtggttgtcctggtgaacaaggttcccctggttgagcagcattac
accaaagagttcactccctatctgaagcattcgtacaaagtggaaagagtcagtggagac
tcccagctgaagatctcttttgccaagattgtgcaaagaaatgacatcatcatttgcaca
gcccagattctggaaaactacttggaaagagcaaccagtggagtggatgaaggagtgaag
ctgagcgatctgtcactaatgataattgacgagtgccaccacactcagaagggagaggcc
tacaaccacataatgatgcgatatctgaagcagaaacacaagaacaaaaaactcaaaaag
gaacagaaggagattgtgcccctccctcagatcctgggtctgaccgcctcgccaggggtt
ggacgagccgcaaggttggagaaagccaaggagcacatactccaaatttgtgcaaaccta
gatgcttcccaaatcatgacaaggagcctcagggatttcaaaagggaaccaagaaaatct
attcagactgttgaagacaaaaaacaagatccctttggtgatgtgatcaaaagaatcatg
catgaaattcatcgtcacgccgaactgaaccccactggcgacctgggcactcaggtgtat
gaacagtggtctgttcagaaagaaagacaggctgctagagagggagatcagaaagtgcga
gtttgtgctgaataccttcgtcagtacaataacggcctgattctccgcaacaccattcga
atgcacgacgccctcagcctcctgaacaattactatgaagagcagtataagaagaaaagt
gctccagatgaggagcaaaacatacaaataacagacacagagagatttctgttcaatctg
tttaaagaaaataagaaagagctggaaagtctggcaaagaatccagagtatgaaaatgaa
agcctgtccaagctgagaactgaaatcctgaaggagttcagcagcaggaagcaggccaga
ggaatcattttcaccaaaacgcgccacagcgccattactctaaatcagtggattcaagaa
aatccaaagtttgatgacattggaatcaaaccagcatatgtgattggaggaggagaccag
agcgatgttaaaccaatgactgcggcagagcaaaaggacgtgttgaagaaattcagtact
ggtgaagtaaacttgttggttgcaacaactgtggcagaagaaggtttggacataccagcg
tgcaattttgtcatccgatatggacacgtcaccaatgagattgctatgatccagtcccaa
ggcagaggaagagctgaggacagcacttacactgtggtcgatgtcaagaactccggagta
gctgagaaggagtgcgtcaacgagcatcgcgaggatatgatgcataaagctattgagaaa
atcaaagctttaagtcaagcagactatgacaagcagattacagactatcagctgcaggct
ataatggaaaacagagtgagacaaaaccgacagaacaaaaaagtcatgaagaatgtgaac
ccagctgcagtgaagttcagctgtaggcactgcaacaaacaagtctgcactggagaagac
atcagtatcattgaagacatgcacagagtcaacgccacagtggactttaggaaattattc
atacagagagaaaattcttctctgcaagaacgacttgtggattatgagaccaatggcatt
atagcctgcaaggactgtggtcagccctggggttcgatgatgatgttccgagggattgaa
ctgccttgtcttttggtgaaaaactttgtggttaatataaatacggaaaatatcagcaaa
tgcagcaagtggagtgacatccctgtcaagttccctgcctttgactacaatgaatatgcc
attcgggtgattgagattgatagtgacgatgaagaaacaaactga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (10)   
   Pfam (10)   
All databases (44)   

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