KEGG   Ostreococcus lucimarinus: OSTLU_88475
Entry
OSTLU_88475       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OSTLU_88475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:olu03019]
    OSTLU_88475
Messenger RNA biogenesis [BR:olu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     OSTLU_88475
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     OSTLU_88475
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 5004098
NCBI-ProteinID: XP_001420179
JGI: 88475
UniProt: A4S3Z6
Position
10:complement(450563..451948)
AA seq 461 aa
MPPPPSGGPQKYRGEALPEWADGPTALAASMDVPGMPGVRAAPTPMMPSGPMPTNQPRQF
QQRERQQGRRPREQRPRGRPHYNGLYMANDEIEGILRIQWSATHPHDRPAYEHDYFYQSW
LRRNNPSKLKEPFCPESLRELASHEKEARGPVTFVPGLAGLGKVPFGNIRSPKPLLDVSS
SNAPKTDGDDDAGEEGTQRRLEQEPLLAARIMIEDSMCLLLDVDDIDRQLEEGRPSESDE
DLKKRRMFLLDGLVSTLRLPSVPVLAVGGAEHDGVFQRIVTLPKGRTLLASALPRFPLGS
AAAATLVWAILRNVGMLLGGKNATNNPSAEALFRAAADSVQLMNAVAVEGTLGAVATGMN
IADAKQQLAPLVSRNSTTGALVAALSAALERAHLLEISPSTHKAFGAAFGIVFSIFDRHA
TNAAQRGGSDSALPRDLLRALMHHCNDAQKQRLKSHISALG
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgccgccgccgccgagcggtgggccgcaaaagtatcgcggggaggcgctgccggagtgg
gccgacggcccgacggcgttggcggcgtcgatggacgtgccgggcatgcccggagtgcga
gcggcgccgacgccgatgatgccctcggggccgatgccgacgaatcaaccccggcagttt
cagcagcgcgagcggcagcaaggtcgtcggccgagggaacaacgaccgcgcggacgtccg
cactacaacggcttgtacatggcgaacgacgaaatcgaagggattctgcgcattcagtgg
agcgcgacgcatccgcacgatcgtccagcgtacgaacacgactacttctaccagtcgtgg
ttgcgtaggaacaatccgtcgaagctcaaagaaccgttttgcccggaaagtcttcgcgag
ctcgcgtcgcacgagaaggaggcgcgaggaccggtgactttcgtcccgggcttggctggg
ctgggcaaggtgcctttcgggaatattcgctcgcctaaaccgctgttggacgtgtcgtcg
agcaacgcgcccaagacggacggtgacgacgacgcgggcgaggaagggacacagcgcagg
ttggaacaagagccgctcttggcggcgcgcatcatgatcgaagactccatgtgcctgttg
ctcgacgtggacgacatcgatcgtcagctcgaagagggtcgaccgagtgagagcgacgaa
gacttgaaaaagcgacgcatgttcttgctcgatggtctagtgagtacactgcgcctgcca
tctgtacccgtgctcgccgtcggcggcgcggaacacgatggggttttccagcgcatcgtc
accttaccgaaaggtcgcaccttgctcgcctctgcgctaccgagatttcctctcggctcc
gccgcggctgcgacgctcgtttgggcgattttgcgtaacgtcgggatgcttctcggaggc
aagaacgcgacgaacaacccgagcgcggaggcgctcttccgcgccgccgcggattccgtg
caactaatgaacgccgtcgccgtcgagggcaccttgggcgcggttgcgactggtatgaac
atcgccgatgccaaacaacagttggcaccgttagtgtcacgaaactcgacgaccggtgcc
ctcgtcgccgcgctgtcggctgctctggaacgtgcgcacttgctcgaaatctcgccctca
acgcacaaggcgttcggcgcggcgttcggcatcgtgttcagtatcttcgatcgacacgcg
acgaatgccgcgcaacgaggtggcagtgacagtgccctccctcgtgacttacttcgggcg
ttgatgcatcactgcaacgacgctcagaagcagcgattgaagagccacatctcggcgctc
ggctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (59)   

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