KEGG   Oceanisphaera profunda: CBP31_07760
Entry
CBP31_07760       CDS       T04856                                 
Name
(GenBank) DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
opf  Oceanisphaera profunda
Pathway
opf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:opf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CBP31_07760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:opf03019]
    CBP31_07760
   03400 DNA repair and recombination proteins [BR:opf03400]
    CBP31_07760
Enzymes [BR:opf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CBP31_07760
Messenger RNA biogenesis [BR:opf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CBP31_07760
DNA repair and recombination proteins [BR:opf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CBP31_07760
SSDB
Motif
Pfam: RQC DEAD HRDC Helicase_C RecQ_Zn_bind ResIII zf-CXXC T4SS-DNA_transf
Other DBs
NCBI-ProteinID: ART82527
UniProt: A0A1Y0D5P6
Position
1795448..1797274
AA seq 608 aa
MTPLTEQVDSVPIPDTPLAVLQQVFGYQSFRDGQQEIIDTVIAGRDALVIKPTGGGKSIC
YQIPALLRSGLTIVVSPLISLMKDQVDSLVANGVAAVYINSTLSREVMHNHLTAMRRGEV
KLVYVSPERLLQQEFMERLGELELGLFAIDEAHCISQWGHDFRPEYALLGRLKQWFPHIP
VMALTATADEATRQDMLSRLNLTDPLIHISSFDRPNIRYTLVDKFKGADQLLRYVADQPG
LCGIVYCSSRKRVEEMAERLINRGHKAASYHAGLPLEVRQSVQERFTRDDLDIVVATVAF
GMGIDKPNVRYVVHYDIPKNIESYYQETGRGGRDGLPAEALLLYDPGDVGRVRRLLENNE
NAQQTQVELYKLNVMAAFAESLTCRRQVLLNYFGEYQREACGNCDICLDPPTRYDGSQDA
QKALSCVYRVGQGFGVTYVVDVLRGADTQRVREYGHDKLSTYGIGKDKSQEHWVSVIRQL
IHCGLLSQNITRNMVLQLTEAARPVLRGEVSLELAEPRMVRVKTKDKSDAALTKPEDKAL
FQEMRKLRKQLADEADVPPYVVFSDATLIELARYRPKTEAELLSINGIGARKLERYGVAF
LRLLRQQN
NT seq 1827 nt   +upstreamnt  +downstreamnt
atgactcccttgaccgaacaagttgattccgttcctattcccgacactcccttggcggtt
ttgcagcaggtgtttggctatcagagctttcgtgatggccagcaagagatcatagatacc
gtcatagctgggcgcgatgccttggtgattaagccgactggtggcggtaaatccatctgt
tatcaaattcctgctttgttgcgctccggcctcactattgtggtgtcgccgttgatttcc
ttgatgaaagatcaggtggatagcttagttgccaacggcgtggcggcggtctatatcaac
agcactcttagtcgtgaggtaatgcacaatcacttaacggccatgcgccgcggtgaagtg
aaattggtctatgtatccccagagcgcttactgcagcaagagtttatggagcgactgggc
gaattagagctcggcttatttgccatcgatgaggcgcactgtatttctcagtggggccat
gattttagacccgaatatgcgctactgggccgactcaagcagtggttcccccatattccg
gtgatggcattaacggccaccgcagacgaagccacgcgccaagatatgctgagtcggttg
aatttaaccgaccctttaatccatatctccagcttcgaccgacccaatattcgctacacc
ttagtcgataaatttaaaggcgccgaccagctgctgcgttacgtagctgaccagcccggc
ttatgtggcattgtgtattgctcgagccgcaagcgggttgaggaaatggccgagcgtttg
attaatcggggccataaagctgccagttatcatgcgggtttgccgctagaggtacgccaa
tcggtacaagagcgctttacccgtgacgatctcgatatagtagtggcgaccgtggccttt
ggtatgggcatcgataagccgaacgtgcgctatgtagtgcactatgatatcccaaaaaat
atcgaatcttattatcaagaaaccggtcgtggcggtcgagacggtctgcccgcagaagcc
ttgttgctctacgatccaggcgatgtgggtcgggtacgccgattgttagaaaacaatgaa
aacgcccaacagacccaagtcgagctctataagctgaacgtaatggcggcctttgccgag
tcactgacgtgtcggcgccaagtgctgctaaattactttggtgaatatcagcgggaagct
tgcggtaactgcgatatttgtttggatccgcctacccgttatgacggtagccaagatgcg
caaaaggcgctgtcttgtgtgtatcgagttgggcagggctttggcgtgacgtatgtggtg
gatgtgctgcgcggtgccgatactcagcgggtgcgcgaatacggccacgataagctttcg
acctatggcattggcaaagataaaagccaagagcactgggtgagtgttattcgccaactt
attcactgcggcttactcagccaaaatataacccgcaatatggtgttacagctcacggaa
gcggcgcggccggtattacgcggtgaagtcagcctagagttggccgagccgagaatggta
cgggtaaaaaccaaagataaaagtgatgcggccttaaccaagcctgaagacaaagccttg
tttcaggagatgcgcaagttacgcaagcaattagccgatgaggcagatgtgccgccgtac
gtggtattcagtgacgctacgcttattgaattagcccgctatcgcccgaaaaccgaagcc
gagctattaagtatcaatggcataggcgcgcgtaagttagagcgctacggcgtagcgttt
ttaaggttattacgccagcagaactag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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