KEGG   Ornithobacterium rhinotracheale DSM 15997: Ornrh_0100
Entry
Ornrh_0100        CDS       T02145                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
orh  Ornithobacterium rhinotracheale DSM 15997
Pathway
orh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:orh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ornrh_0100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:orh03019]
    Ornrh_0100
   03400 DNA repair and recombination proteins [BR:orh03400]
    Ornrh_0100
Enzymes [BR:orh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Ornrh_0100
Messenger RNA biogenesis [BR:orh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Ornrh_0100
DNA repair and recombination proteins [BR:orh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Ornrh_0100
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind Helicase_C_2 TFA2_Winged_2 RPA_C STN1_2 DUF2620
Other DBs
NCBI-ProteinID: AFL96329
UniProt: I3ZX95
Position
100425..102308
AA seq 627 aa
MNTTPENILQKYWGYSEFRAPQKEIIESILAGKDTFALLPTGGGKSLCFQIPALMMEGVC
VVISPLVALMKDQVQSLKKKGIKAEFLTSENTEQSPQVLMDNVRYGGVKLLYISPERMAQ
TSFKSFLENLKISYFAIDEAHCISEWGHDFRPSYLALKELKNEFPDKPILALTATATPHI
QNEILKQLQIQNATVFKKSLQRKNLAYRIHQSTDKLDDLVYYLKKYPGSSIVFCKSRKQT
YDIAKFLKEKKFNATYFHARLSKEDKNSRQKRFIESNDLVLVSTNAFGMGIDKPDVRLVV
HYNAPSTIESYFQEVGRGGRDGKLSHGILLYHEEDKKKAIKQFKAALPSKEEFLIMIRKL
YSYYQIAEGELREGQHAFSEKKIIKTFKFYKPKFKSVISFLEMKNSIKIHDSQRQSLVKI
NEDNYEIKEGESLPDRLLDYIARHYGGVFSDPKPIDEYILSRKLDTSTSAIKEALQKLNQ
QGKIYYRNAAIKKISFLTQRDDNLVQNRYWKEFYDLQLLKWKRLNDVYFFIEDSSYCKSQ
LLLKYFGEKPKEKCGICNICNPYEGTQNITEKEIFAYLSENPKTQDEILFHFIKADAQRV
LDLLQNLIDEEKIQFTLPNYYSICKAN
NT seq 1884 nt   +upstreamnt  +downstreamnt
ttgaacaccacgccagaaaacatattacagaaatattgggggtattccgaattccgtgca
ccacagaaagaaatcatagaaagtattttggcaggaaaagatacctttgcgctgcttccc
acgggaggcggaaaatcgctctgtttccaaattccagccttgatgatggagggcgtttgt
gtagtgatttcgccacttgtggctttgatgaaagatcaggtacagagtttaaagaaaaaa
ggcataaaagccgaatttctcacatctgaaaacacagaacaaagtccgcaagttttgatg
gataatgtgcgatacggaggagtgaaactgctctatatttctccagagcgaatggcacaa
actagttttaagagctttcttgaaaatttaaaaatatcctattttgccatagatgaggca
cattgcatttcggaatgggggcacgacttccgtccgtcttatttggctttaaaagagctt
aaaaacgaatttcccgacaagcctattttggcactcacagccacggcaacgccacatatt
caaaacgagattttaaagcaattgcaaatccaaaatgcaaccgtttttaaaaaatcatta
caaagaaaaaatttagcctaccgaatccatcaaagtaccgataagctcgatgatttggtg
tattatttaaaaaaataccctggcagtagcattgtgttttgcaaaagcagaaagcaaact
tatgacattgcgaaattcttaaaagaaaagaagtttaatgccacttatttccatgcgcga
ttgtccaaagaagataaaaattcacgacaaaaacgatttatcgagagcaatgatttagtc
ttagtttcgaccaacgcttttggtatgggaatcgataagcccgatgtgcgtttagttgtg
cattacaatgcaccaagcacaatagaatcctactttcaagaagtggggcgcggtggacga
gatggcaaactgtctcacgggattttgctatatcacgaggaggataagaaaaaagccata
aagcagtttaaagcagctttgccgagcaaagaagagtttttaataatgataaggaaactc
tactcgtattatcaaatagccgaaggtgagttgcgagaggggcagcatgctttttctgaa
aagaaaattatcaaaacttttaaattttataaacctaaattcaaatcggtgatttccttt
ttggagatgaaaaatagcatcaaaatccatgactcgcaacgacaaagcttagttaaaatc
aatgaggataattatgaaataaaagaaggagaatcgctcccagatcgcttgctagactac
attgcaagacactacggtggcgtgttctcggatcccaaacccatcgatgagtatatactt
tctcgcaagttggacacgagtacttctgcaataaaagaagcactccaaaaactgaatcag
caaggaaagatttattatagaaatgctgccattaaaaagatttcgtttttaacgcaacga
gatgataatttagtgcaaaatcgatattggaaagaattttacgatcttcaattattaaaa
tggaaaagactaaacgatgtttatttctttatcgaggattcatcgtattgcaagagccaa
ctactgcttaaatattttggagaaaaaccaaaagaaaaatgcggaatttgcaatatttgc
aatccctatgagggaacacaaaatattaccgaaaaagagatttttgcctatttaagcgaa
aatccaaaaacacaagatgagattttgtttcatttcattaaagctgatgcacagcgtgtg
ctggatttgttgcaaaacttaatcgacgaagaaaaaatacaatttacattacctaattat
tattcgatatgcaaagcaaattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (40)   

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