KEGG   Ornithobacterium rhinotracheale ORT-UMN 88: Q785_05280
Entry
Q785_05280        CDS       T03303                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ori  Ornithobacterium rhinotracheale ORT-UMN 88
Pathway
ori03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ori00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Q785_05280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ori03019]
    Q785_05280
   03016 Transfer RNA biogenesis [BR:ori03016]
    Q785_05280
Enzymes [BR:ori01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Q785_05280
Messenger RNA biogenesis [BR:ori03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Q785_05280
Transfer RNA biogenesis [BR:ori03016]
 Prokaryotic type
  tRNA degradation factors
   Q785_05280
SSDB
Motif
Pfam: RNB CSD2 OB_RNB OB_Dis3 S1 RNase_II_C_S1 Rrp44_S1 TBPIP
Other DBs
NCBI-ProteinID: AIP99235
Position
1068871..1071021
AA seq 716 aa
MSKNKRSKRHHSQDNSFRKTAKKVLQYYLKYPNKTLNHKQLGSALQYTNAQEKQHLIKAL
SRLVANDSLIEVSPGKFKLNMEKNMLVGTIDFTSSGAAYVIVEGLEDDIYIPKGQTKNAL
QGDLVQLILHKTSRGKKPEGSIAKVIQRHRMQYVGVLEIIGDRKYGFVIVEGKSMPVDIY
VPKENLNHAQNGDKVVCNVVSWPEDADSPFGEITRVLGKPGVHDVEIHSILAEYGLPAAF
PKEVEDEAQNLDTEIKLEEIAKRRDMRDVPTFTIDPKDAKDFDDALSFRILENGNYEVGV
HIADVSYYVKPGTLLDEEAYKRGTSVYLVDRVVPMLPEVLSNFACSLRPNEDKYTFSAVF
EMDKNANIIKSWFGRTVTHSDKRYAYEDAQAIIEGGEGELKEEILILDKLAKILRKERLK
NGAISFDRLEVKFNLDEDGNPLGVYFKESKDANKLIEEFMLLANRKVSEFVSLKRGKPTD
RTFVYRIHDDPDPEKLASLKQFIHQFGYKLELGDRKKTTASINQLLHDVKGKGEENMIET
LAMRSMSKAIYSTDNIGHYGLAFEYYSHFTSPIRRYPDVMAHRLLQRYLDGGKSAEKEVY
EEKCEHCSQRERLAADAERDSIKYMQVKFMDKHVGEEFSGIITGVTEWGIYVELPECRAE
GLVRLRDIHDDHYIFDQKNYAIVGQTTGNTYQLGDEVNVKLTRADLDKKQLDLELL
NT seq 2151 nt   +upstreamnt  +downstreamnt
atgtctaaaaataaacgatctaaacgacatcattctcaagataatagttttagaaaaacg
gctaaaaaagtattacaatactatttaaaatatccaaacaaaacacttaatcacaagcaa
ttaggttctgcattgcaatacaccaatgcacaggaaaagcaacatttgatcaaggcactt
tctcgcctcgtggcaaatgatagcttgatcgaagtttctccaggaaaatttaaactgaat
atggagaaaaatatgcttgtgggtaccattgatttcacctcatctggagctgcttatgtg
attgtagaagggctggaagatgatatttatatcccaaaaggacaaaccaaaaacgctcta
caaggcgatttggttcagcttattttgcacaaaacttctcgtggcaaaaagccagaaggt
agcattgccaaagtgattcagagacatcgcatgcaatatgtgggcgtgctagaaatcata
ggcgatagaaaatatggttttgtcatcgtagaaggcaaatcgatgccagtagatatttat
gtgccaaaggaaaacttaaaccatgcacaaaacggcgacaaagttgtgtgtaatgttgtg
agctggccagaagatgccgattcgccatttggcgaaatcacacgtgtgcttggaaaacca
ggtgtgcacgatgtggagattcattccattttggcagaatatggcttgcctgccgcattc
cctaaggaagtggaagacgaggcacaaaaccttgataccgaaattaaactagaagaaatc
gccaaaagacgcgacatgcgtgatgtgcctacctttaccatcgacccaaaagatgctaaa
gattttgacgatgcactttcgttcagaatccttgaaaatggaaattacgaagtgggcgtg
cacattgccgatgtttcgtattatgtaaaacctggcactttgctcgatgaagaggcttat
aaacgaggaacttctgtgtatttggtagatcgcgtggtgcctatgttgccagaggtgttg
agtaatttcgcttgttcgctaagacccaacgaagataaatatacattttcggctgttttt
gaaatggataaaaacgccaatatcatcaaaagctggtttgggcgcaccgttacgcattca
gacaagcgttatgcgtatgaagatgcacaagccatcatagaaggtggagagggcgaattg
aaggaagaaattttaattctagataaattagccaagattttaagaaaagaaaggcttaaa
aacggagcgattagttttgaccgattggaggttaaatttaatttagacgaagacggaaat
ccacttggtgtttatttcaaagaaagcaaagatgccaataagctcatcgaggaatttatg
cttttagccaatcgaaaagtatctgaatttgtgagcttaaaaagaggtaaacctacggat
agaacctttgtttatcgtatccacgatgatccagatccggagaaattagcaagtttaaaa
caatttattcatcaatttgggtataaattggagttaggagaccgtaaaaagaccaccgca
tctatcaaccaacttttgcacgatgtgaaaggaaaaggcgaagaaaatatgattgaaacg
cttgcaatgcgatctatgtccaaggcgatttactcaaccgataacattggacactacgga
ctggcatttgaatattattcgcattttacatcacctatacgccgttatcccgatgttatg
gcacatagactactccaacgctacttagacggtggcaaatcggccgaaaaagaggtgtac
gaggaaaaatgcgaacactgcagtcagcgcgaaagattggcagccgatgccgagcgagat
agcattaaatacatgcaagttaaattcatggacaaacatgtgggcgaagagttcagcgga
atcattacaggagttaccgaatggggaatttatgtggaactgcctgaatgccgcgccgag
ggcttggtaagacttcgtgacattcacgatgatcactatatattcgaccaaaagaattat
gccatcgtaggacaaaccacaggaaatacctaccaattgggcgacgaggtaaatgtaaaa
cttactcgcgccgatttagataaaaaacaattggatttggaattgttgtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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