KEGG   Odobenus rosmarus divergens (Pacific walrus): 101369891
Entry
101369891         CDS       T05148                                 
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X2
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
oro  Odobenus rosmarus divergens (Pacific walrus)
Pathway
oro03008  Ribosome biogenesis in eukaryotes
oro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oro00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    101369891 (XRN1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101369891 (XRN1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oro03019]
    101369891 (XRN1)
   03009 Ribosome biogenesis [BR:oro03009]
    101369891 (XRN1)
   03016 Transfer RNA biogenesis [BR:oro03016]
    101369891 (XRN1)
   03036 Chromosome and associated proteins [BR:oro03036]
    101369891 (XRN1)
Messenger RNA biogenesis [BR:oro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     101369891 (XRN1)
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     101369891 (XRN1)
Ribosome biogenesis [BR:oro03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    101369891 (XRN1)
Transfer RNA biogenesis [BR:oro03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    101369891 (XRN1)
Chromosome and associated proteins [BR:oro03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    101369891 (XRN1)
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer
Other DBs
NCBI-GeneID: 101369891
NCBI-ProteinID: XP_004397355
UniProt: A0A2U3VQ97
Position
Unknown
AA seq 1705 aa
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKTYKEKKKSKGQENAICWAALDKNGEVVTSKDNLEDETE
DDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYY
PYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSPI
IEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMC
WYDRDTEFTYPSPWPEKFPAIERCCTRYKIISLDAWRVDISKNKITRIDQKALYFCGFPT
LKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELSVENIASSVLGKSVFVNWPH
LEEARVVGISDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQSNWTKEVQGISEYY
LRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAFDS
RFSNIKTLDDLFPPRSMVFMLGTPYYGCAGEVQDSGDVITEGRIRVVFSIPCEPNLDALI
QNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNK
KNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENE
NGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTVK
PHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLFE
VLFDEEFPGGLTIRCSPGRGYRLPTSALVNLTHGSRSETGNQKLTAIVKPQPAVNHYSSN
SSISSGHLGGLNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKVQHFQPTLQEKVAVLP
QEVSQVTQHHKSGFTDNSIKCQQRKHEPHRKFKEECKSPKTESRLQKLSNKQPNPGIENF
LASLNISKENEVQSSHHEEPPSEELLSPQSFAMGTRMLKEILKIDGSDAVDHKNEMKQFG
NEVTVSSNRRDEYGPSSQAKQNKKLTSYMNKLHSTSEYHNVQSMDHVCWPAPSHIPPVST
PVTELSRICSLVGMLQPDFSFLRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFA
LQQLGSLGVNFPLPPPIFPNYPPAVPPGTVPPVFPQPTGWDHYGSNLALGAANIMPSSSH
LFGSMPWGPPVPVPGKPFHHSSYSGTMPMAGGMPGGVHNQFIPLQVTKKRVANKKNFESK
EAQSSQATPLQTSQPGSSIVTKVIPQESSSASLKSSQITQPASSFQAEAASQGHSMSHHK
STPSSSSRRKSRKLAVNFGVSKPSE
NT seq 5118 nt   +upstreamnt  +downstreamnt
atgggagtccccaagttttaccgatggatctcggagcggtatccctgcctcagtgaagtg
gtgaaagagcatcagattcctgaatttgataacttgtacctggatatgaatggaatcata
catcaatgttcccatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgcattattaaacctaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgggggagg
cgttttaggtcagcaaaggaggcagaagacaaaataaaaaaggcattagaaaaaggagaa
actcttcctacagaggccagattcgattccaactgtattacaccagggactgaattcatg
gcccggttacatgaacatctgaagtattttgtaaatatgaaaatttctacagataagtcg
tggcaaggagttaccatctacttctcaggccatgagactcccggagaaggagagcataaa
atcatggaatttatcagatcggagaaagcaaagccagatcatgatccaaacaccagacat
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcacgaggcacat
ttctctcttttaagagaagaggttcggtttggtggcaaaaagacacaaagggtatgtgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagagtatattgactat
gagttttcagtattgaaagacaagatcacttttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatataaccatcctgccagaa
cttggtggttatattaatgaaagtgggcatctcaacttacctagatttgagaaatacctt
gtgaaactatcagattttgatcgggaacacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgttgcagcagaagaa
gccaagacctacaaggaaaagaaaaaatcaaagggccaggaaaatgccatttgttgggct
gctttagacaaaaatggagaagtggtaacttctaaggataatttagaagatgagactgaa
gatgatgacctatttgaaactgagtttagacaatataaaagaacatactacatgacgaag
atgggagttgatgtagtgtctgacgactttctggctgatcaagctgcatgttatgttcag
gcaatacagtggattttgcactattactatcacggagttcagtcttggagctggtattat
ccctaccattatgcacctttcctgtctgatatccgtaacatcagtacactcaaaatccat
tttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtacttccagcagct
agcaaaaatttacttcctacatgctaccagcacttgatgaccagtgaagactcaccaatt
atagaatattatccacctgattttaaaactgacctaaatgggaaacaacaggaatgggaa
gctgtggtactaataccttttattgatgagaagcgattattggaagccatggaaacatgt
aaccactccctcaaaaaggaagaaaggaaaagaaaccaacatagtgaatgcctaatgtgc
tggtatgatagagacacagagttcacttacccgtcaccatggccagaaaagttccctgcc
atagaacgttgttgtacaaggtataaaataatatcattagatgcttggcgtgtagacata
agcaagaacaaaataaccaggattgaccagaaggcactgtatttctgtggatttcctacc
ctgaaacacatcaaacacaaattttttttgaagaaaagtggggttcaagtattccagcaa
agcagtcgtggagaaaacatgatgttagaaatcttagtgaatgcagaatcagatgaactt
agcgtagaaaatatagcttcatcagtgcttggaaagtctgtctttgttaattggcctcat
cttgaagaagctagagttgttggtatatcagatggagaaactaaattttacttggaagaa
cctccaggaacacagaagctttatttgggaagaactgccccaccatctaaagtggtccat
cttggagacaaagaacaatctaactggacaaaagaagtacaaggaatttcagaatactac
ctaagaaggaaaggaataataataaatgaaacatctgcagttgtatatgctcagttactc
acaggtcgtaaataccaaataaatcaaaatggtgaagttcgtctagagaaacaatggtca
aaacaagttcttccttttgtttatcaaactattgtaaaggacatccgagcttttgactcc
cgtttctccaatatcaaaacattggatgacttgtttcctcctagaagtatggtctttatg
ctgggaaccccctattatggctgcgctggagaagttcaagattcaggggatgtgattaca
gaaggtaggattcgtgtggttttcagcattccatgtgaacccaatcttgatgctttaata
cagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgtctt
ggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagaggatct
aggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattcaacaaa
aaaaatgaggaggtacctggatataccaagaaagttggaagtgagtggatgtattcatct
gcagcagaacaacttcttgcagagtacttagagagagctccagaactatttagttatata
gccaaaaatagccaagaggatgtattctatgaagatgacatttggcctggagaaaatgag
aacggtgccgagaaagttcaagaaattattacttggctaaagggacatcctgtcagtact
ttgtctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaattgag
gaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtacgagtgacagtgaag
ccccatttgctgtacagacctttagaacagcaacatggagtcattcctgatcgagatgca
gaatttcgtctctttgaccgtgtggtaaatgtgagagagaacttttcagttccagttggc
cttcggggcaccatcataggaattaaaggggctaatagagaagctgatgtactatttgaa
gtgttatttgatgaagaatttcctggaggcttaacaataaggtgctctcctggtagaggt
tatcgactgccaacaagtgccttggtgaatcttactcatgggagtcgctctgaaaccgga
aatcagaagttgacagccattgtgaaaccacaaccagctgtgaatcactatagctcaaat
tcatcaatttcatctgggcatttgggaggcctgaaccattcccctcaatcactttttgtt
cctactcaagtacctactaaagatgatgatgaattttgcaacatttggcagtccttacag
ggatctggaaaggttcaacactttcagccaactctacaagagaaggttgcagttctacct
caagaagtaagtcaagtaactcaacatcataaatctggctttactgacaacagtattaaa
tgtcagcaaagaaaacatgagcctcacagaaaatttaaagaagagtgtaagagtcctaaa
actgagagtcggttacaaaaactgtcaaataagcagcctaaccctggaattgagaacttt
ttagcatccttgaatatctccaaagaaaatgaagtacagtcatctcatcatgaagagcct
ccaagtgaagaacttttgtcaccacaatcatttgctatgggaactcggatgcttaaagaa
atactaaaaattgatggctctgatgctgtggaccataaaaatgaaatgaagcagtttggt
aatgaagtcactgtttcctctaatagaagagatgaatatggaccttcctcccaggctaaa
caaaataagaaattaacatcttatatgaataagcttcacagtactagcgaataccataat
gttcagtctatggaccatgtgtgttggcctgctcccagccatatccctcctgtgtccaca
ccagtaactgaactttctcgaatttgttcccttgttggaatgctacaaccagatttctcc
tttcttagaacaccacagacaatgacagtttgccaggtaaaattatctaatggcttactg
gtacatgggccacagtgccattctgaaaatgaagccaaggaaaaagccgcactttttgct
ttacaacaattgggctccttaggagtgaatttccctttgcctccaccaatatttccaaat
tatcctcctgctgtaccacccggaaccgttcccccagtttttcctcaacctactggctgg
gatcactatggaagcaacttagcactgggggcagctaatataatgccttcatcatctcat
ctctttggatccatgccatggggaccaccagtgccagttcctgggaagccatttcatcat
tcttcatattctgggaccatgcccatggctgggggaatgccaggtggtgtgcacaatcag
ttcatacctctacaggttactaaaaaaagggttgcaaataaaaagaactttgagagtaag
gaggcccagagttctcaagctaccccgcttcagactagccagccagggtcttccattgtc
accaaagtgattccacaggagagttcatcagcttccttaaagtcctctcagattactcaa
cctgcatcttcttttcaagctgaagctgcctcccaaggccatagtatgtctcatcacaag
tccacaccgagctcatcttcaagaagaaaatcaagaaaactggccgtcaattttggcgtt
tctaaaccttctgaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (45)   

Download RDF
DBGET integrated database retrieval system