KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4329095
Entry
4329095           CDS       T01015                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4329095
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4329095
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4329095
Spliceosome [BR:osa03041]
 Complex C
  Other components
   Step II factors
    4329095
SSDB
Motif
Pfam: OB_NTP_bind HA2_C S1 HA2_N Helicase_C DEAD AAA_22 AAA_19 nSTAND3 AAA_30 AAA_16 TsaE ABC_tran Sigma54_activ_2 T2SSE Flavi_DEAD SLFN-g3_helicase PhoH
Other DBs
NCBI-GeneID: 4329095
NCBI-ProteinID: XP_015626249
UniProt: Q6K4U8
Position
2:11668252..11673606
AA seq 1240 aa
MAPTAAAAGPSDDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDSASVADFD
TKLKANGADLPDYFVRTLLTIIHAILPPPSDSRNPSSASQPAAGGSKFPGLSRPDDPDRA
RNLRLELERDAEEAAATAAPAPARDDRGRRRDERGRDRGRDDRGRDDGGRDRDYERGGRD
HDRSHGRDRDHGRDRDRDRACDGDRQRGRDYGRDRDQDRDHDRDREGERRRDRDKDRGRD
IDRDMDRDHRRGRRYDDEEEPEQFGGRKEGALVNSSGEPELYQVYRGRVTRVMDTGCFVR
LEDVRGGREGLVHISQMATRRVANAKEMVKRDQEVYVKVVSVKGQKLSLSMRDVDQDTGR
DLLPIQRGGDDAPRANPSGGSASGVGVGSGKRLGLSGIMIAEEDEVAPPSRRPLKRMSSP
ERWEAKQLIASGVLDVRDYPMFDEDGDGMLYQEEGAEEEQEIELNEDEPAFLQGQSRFSI
DMSPVKIFKNPEGSLSRAAALQTALIKERREVREQEQRAMLDSIPKDLNRPWEDPMPDTG
ERHLAQELRGVGLSAYDMPEWKKEAYGKALTFGQRSKLSIQDQRQSLPIYKLKKELIQAV
HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRL
GEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLF
GLLKQLIKRRSDMRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLD
AALITVLQIHLTEPEGDILLFLTGQEEIDHACQCLYERMKGLGKDVPELIILPVYSALPS
EMQSKIFDPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKINVYNSKQGLDSLVITP
ISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGSTVLNMKAMGIN
DLLSFDFMDPPAPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVD
LGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFS
GPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVVSAGRNFTKIRKAITAGFFFHAARK
DPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLTELAP
RFYKSADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq 3723 nt   +upstreamnt  +downstreamnt
atggcgccgacggcggcggcggcggggcccagcgacgacgggctccggaagctggagtac
ctctcgctggtctccaaggtgtgctcggagctggagacccacattggcgtcggcgacaag
gtgctcgccgagttcatcaccgagctcggccgcgactccgcctccgtcgccgacttcgac
accaagctcaaggccaacggcgccgacctcccggactacttcgtccgcaccctcctcacc
atcatccacgccatcctcccgccgccctccgactcccgcaaccctagctccgcgtcgcag
cccgccgcggggggctccaagttccccggcctctcccgccccgacgaccccgaccgcgcc
cgcaacctccgcctcgagctcgagcgggacgccgaagaggccgccgcgacggcagccccc
gcccccgccagggacgaccgcggccgccgccgtgatgagcgaggacgggaccggggtcga
gatgaccgcggccgcgacgacggtgggcgtgaccgcgactatgaacgcggcggccgtgac
catgaccgcagccatggccgggatcgtgaccatggccgtgacagagaccgagatcgagcc
tgtgatggggatcgacaacgtggccgtgactatggccgtgatagagaccaagacagagat
cacgacagggatcgtgaaggtgaacggcggagggaccgagataaggataggggtagagac
attgacagagatatggacagggaccataggcgaggcaggaggtatgatgatgaggaagaa
ccagaacagtttggtggaaggaaagaaggcgctcttgtgaattccagtggcgagccagag
ttgtaccaggtgtaccggggtagggtgacacgggtaatggacaccggttgctttgtcagg
cttgaggatgttcgtggaggacgtgagggtcttgttcacatctcacaaatggcaaccagg
cgagtggccaatgcgaaagagatggtgaagcgtgatcaggaggtgtatgttaaggtggtt
tccgtgaagggccagaaattgagtttatcaatgagggacgtagatcaggatacagggaga
gatctcctgccaatacaacgtggtggggatgatgcaccaagggcgaacccatctggtggt
agtgctagtggtgttggtgtgggctctggcaagaggctgggtctctctgggattatgatt
gcagaggaggatgaggttgcacctccttcacgtcggccacttaagcggatgagctctcca
gagaggtgggaggcgaagcagctgattgcttcaggtgttctggatgtgagggattaccca
atgtttgatgaggatggggatggtatgttgtaccaggaggaaggggcagaagaggagcag
gagattgagcttaatgaagatgaacctgctttcttgcagggacagagtagattttcgatt
gacatgtcacctgttaagattttcaagaatccagagggctcattgagccgagcagctgct
ctccaaactgctctcataaaggagcggcgtgaggttcgggaacaggaacagagagcaatg
ttggattcaatccccaaggatctgaatcggccatgggaggaccctatgcctgatactggg
gaacggcaccttgcgcaggagctgaggggtgttggactttcagcttatgacatgcctgaa
tggaagaaagaagcctatggaaaggctctgacatttgggcaaaggtctaagctttcaata
caagaccagaggcaaagtcttccaatatacaagttgaagaaagagctgatacaagctgtg
catgataaccaagtcttggttgttattggagagactggttctggtaaaacaacacaggtg
acacaatatttggccgaagcaggctacacgaccagaggtaagattggttgcactcaacct
cgtcgtgtggctgcaatgtctgttgctaagagagtagcagaagaatttggttgtcgactt
ggagaggaagttggttatgccatccgctttgaggattgcactgggcctgacacggtaatc
aaatacatgactgatggcatgcttttgcgtgagattcttgtcgatgagaacctttcccag
tattctgtaattatgcttgatgaagcgcatgaaaggaccatacacacagatgttctcttt
ggcttgctgaaacagcttattaagcgcagatctgacatgaggcttattgttacttctgct
accctggacgcagagaagttctcagggtattttttcaattgcaacatcttcacaattcct
ggaaggacgttcccggtagagatactctacaccaaacaaccagaaagtgactatttggat
gcagcattgatcaccgtgcttcaaatacacttgactgagccagaaggtgatatcctcctt
tttttgactggtcaagaggagattgatcatgcttgtcaatgtctttatgagaggatgaaa
gggctagggaaggatgttcctgagctcataatattgcctgtttatagtgctcttccgagt
gaaatgcagtcgaagatctttgacccagctcctccagggaagaggaaggttgttgtggcc
accaatatcgctgaagcttctctaaccattgacggcatatattatgtcgtcgatcctggt
tttgccaaaattaatgtttataattcaaaacaaggactcgattcattggtcatcactcca
atctctcaagcatcagcgaagcagagggcagggcgtgctgggcgtactggccctggcaaa
tgctatcgtctatacactgaaagtgcataccgcaatgaaatgtctcccacaacaatccca
gaaattcaaaggattaacttggggtctacagttctcaacatgaaggcgatgggaatcaat
gacctattatcctttgatttcatggaccctcctgcacctcaagcacttatatctgcaatg
gagcaattgtacagcctaggtgctcttgatgaagaagggctccttaccaaactggggagg
aaaatggctgaatttccactggatccaccactttcgaagatgcttctagccagcgttgac
cttggatgcagtgatgagatactaactattatagctatgatacaaactgggaacattttc
tataggccaagagaaaaacaggctcaggctgatcaaaagagggccaagtttttccagcca
gagggggatcatctaactctgcttgctgtatatgaggcgtggaaggcaaaaaacttttca
gggccctggtgttttgagaactttgttcaatcaagatccttaaggagagctcaagatgtg
aggaagcagcttctcactatcatggacagatataaattggatgttgtctcagctgggagg
aacttcacaaaaataaggaaagcaatcactgccggcttctttttccacgctgccaggaag
gatccccaggagggatacagaaccttggtagagaaccagccggtgtacatacacccgagc
agcgcattgttccagcggcagccagactgggtcatctaccacgaacttgtaatgacgacg
aaggagtacatgcgggaggttaccgtgatcgacccgaagtggcttactgagctagccccg
agattctacaagtcagcagacccaaccaagatgagcaagaggaagaggcaggagaggatt
gaacccctgtacgacaggtaccatgagcccaactcctggcgtctcagcaagcgccgagct
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (108)   
   KEGG ORTHOLOGY (1)   
   RefGene (103)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (18)   
   Pfam (18)   
All databases (136)   

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