KEGG T01015: 4330120

Oryza sativa japonica (Japanese rice) (RefSeq): 4330120

Entry

4330120           CDS       T01015

Name

(RefSeq) DEAD-box ATP-dependent RNA helicase 8

K12614

ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]

Organism

osa Oryza sativa japonica (Japanese rice) (RefSeq)

Pathway

osa03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4330120
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4330120
   03036 Chromosome and associated proteins [BR:osa03036]
    4330120
Enzymes [BR:osa01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     4330120
Messenger RNA biogenesis [BR:osa03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     4330120
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     4330120
Chromosome and associated proteins [BR:osa03036]
Eukaryotic type
  Gene silencing
   piRNA pathway
    4330120

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII CMS1 TFIIA

Other DBs

NCBI-GeneID:

4330120

NCBI-ProteinID:

XP_015627069

UniProt:

Q6H7S2

Position

2:25767214..25774460

AA seq 508 aa
MDPRARYPPGIGNGRGGNPNYYNRGPPLQQQHNHHQQQQTSAPHHQQYVQRQPQQHHHHN
HHQQHQQQQQQWLRRNQIAREAAGTDRNSEPKAVAQSPAVDGIDSSSQDWKAQLKLPPQD
TRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKN
GTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGT
SLKDDIIRLYQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQL
IRYLPASRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVH
CLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG
ACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDR
FNLYRIEQELGTEIKPIPPQIDQAIYCQ

NT seq 1527 nt +upstreamnt +downstreamnt
atggatccgcgcgccaggtaccctcccggcatcggcaacggccgcggcgggaaccccaac
tactacaaccgcggcccgccgctgcagcagcagcacaaccaccaccagcagcagcagacg
tcggcgccgcaccaccagcagtacgtgcagcgccagccgcagcagcatcaccaccacaac
caccaccagcagcatcagcaacagcagcagcagtggctgcggcggaatcagatcgcccgc
gaggccgcgggaaccgacaggaatagcgagccgaaggctgtggcgcaatccccagccgtc
gacggcatcgattcgagttcacaagactggaaggcccaattgaagcttccacctcaagat
acacgatacaggacagaggatgttacagccaccaaaggaaatgagtttgaagactatttt
ctcaagcgtgaacttctgatgggaatatatgagaaaggatttgaaagaccctctccgatc
caagaagaaagcattcctattgcattaactggtagtgatattctagccagagcaaaaaat
ggaactggcaagactgctgcattttgtatccctgcactagaaaagattgatcaagagaaa
aacgctattcaagttgttatattggttcccacaagggagctggctttgcaaacgtcacaa
gtttgtaaagagcttgggaaacatctgaagatccaggtcatggtcaccactggaggaacc
agcctgaaagatgatatcattcgtctctatcaacctgtccatttacttgttggaacgcct
gggcgtattttggaccttacaaagaaaggtatctgcattttgaaggactgctctatgctt
atcatggatgaggcagacaagcttctctctcctgagttccagccttccgtggaacagctg
attcgttaccttccagcgagccggcaaattttgatgttctcggcaacgttccctgtgact
gtgaaggagttcaaggacaaatacctgcctaaaccttatgttattaaccttatggatgaa
cttacactgaagggaattacacagttttatgcttttgtagaagaaaggcagaaagttcat
tgccttaacactctcttttccaagcttcaaatcaaccaatcaataatcttctgcaactct
gtaaatcgtgttgagcttctggcaaagaagatcacggagcttggttactcttgcttctac
atccatgcaaagatgctgcaagaccatcgtaatagagttttccatgatttccgtaatggg
gcatgcaggaacctggtttgtacagatcttttcacaaggggaattgacattcaagctgtt
aatgttgttatcaattttgatttccccaaaaccgctgaaacatacctccacagggttggt
agatctgggagatttggccatcttggcctggctgtgaatttgatcacctatgaggatcgg
tttaacttgtataggattgagcaagagcttgggactgagataaaaccaattcctcctcag
attgaccaagctatatattgccaataa

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