KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4341408
Entry
4341408           CDS       T01015                                 
Name
(RefSeq) polyadenylate-binding protein 4-like
  KO
K13126  polyadenylate-binding protein
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03015  mRNA surveillance pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    4341408
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4341408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4341408
   03041 Spliceosome [BR:osa03041]
    4341408
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     4341408
   mRNA cycle factors
    Stress granule specific factors
     4341408
Spliceosome [BR:osa03041]
 Complex C
  Other components
   Complex C specific factors
    4341408
SSDB
Motif
Pfam: RRM_1 PABP RRM_7 RRM_5 RRM_occluded Nup35_RRM Phage_lysis
Other DBs
NCBI-GeneID: 4341408
NCBI-ProteinID: XP_015643428
UniProt: Q69X94
Position
6:complement(23136330..23141097)
AA seq 670 aa
MAIPTPSPSVVDQPSPPAPASAAAAASQPLAGDPAPEAAAAAEGAGGDQTAPAAAAATGA
SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME
NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV
ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT
NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL
NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR
KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR
KEERKAFLAAHFARVRALATMAPTLGPNIAPHQFNFGHGVPALFPPPPPAGFGFQPNFVP
NMMMPYNMQRQPGQRSGPPHGGMPRHLHNPHQMFHQNANQGFRHMPNRRNGVANPAMLHQ
HHRFSSPMQPMQQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVN
EKAYKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMKVLELEATATAAAAAAASGSGDGD
AAAPSSSSAA
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggcgatccccacgccttcgccatcggtcgtagatcagccgtcccctcccgcgcctgct
tccgccgccgcggcggcgtctcagccgctagccggcgatccggctcccgaggcggcggcg
gcggcggagggggcggggggtgatcagacggccccggcggccgccgccgccaccggcgcg
tcgctgtacgtgggagacctggaggcgagcgtcggggaggaccagctcgtggcgctcttc
tcccaggtggcgcccgtcgcgtccgcctatgtgtgccgcgacatcgccggcggcagaaag
tccttgggatacggctacgtcaacttcatgtcgcgtgaagacgctacccgtgccatggaa
aatctaaacttcaccgttgtcaatgggaagccaatcagagtcatgttttcgaatagggat
ccaactctgcgaaaaagtggacttgccaatgtgtttataaaaaatcttgaaccgaatatt
gacaacaagagtttgtatgaaatgttttcgtcttttggcacaatcctctccagtaaggtt
gccacagatttcaatggaaagtctaagggttatggatttatacaatttgagagcgagtcg
tctgctaaggatgctatcaatggcctaaatggcatgttggctaatggacaaaaaatattt
gttggattgttcatccgccggcaggagagagaacacactggagacgctaacaactttact
aatgtatatgtgaaaaatttaccaaaacattttagtgataacgatttgctaaatgagttt
tcatcatttggtgcaattactagtgctattgtcatgagagatgcaaatggattgtcgaga
tgctttgggtttgtaaactttgagaaatcagaatgtgctagaaatgcagttaaaaatctc
aatgggaagtccattggtgatatggtgttatatgttgcaagggctcagaaaaaatcagaa
agacaagctgagttaaaagcgaaatttgagcatgacaaaaatcagaaatttgagaagctt
caaacagtcaatctatacttgaagaatttggatgatgacatcaatgatgagcatcttagg
aagttgtttgaatgttttggtgaggtagcatcatgcaaggtcatgcttgattcgcatgga
aggagcaagggttgtggatttgtatcttttgcaactgttgaagacgctaacaatgctatt
ttaaaaatgaacgggaaaatggttgggaaaaagccattatatgttgccgtagctcaacgg
aaggaggagagaaaggcatttttagcggcacattttgctcgtgttagagccctagcaaca
atggcacctacattagggccaaacattgctccccatcagttcaattttggccatggtgtg
cctgccttgttcccaccaccaccacctgcaggctttgggttccaaccaaattttgttcca
aacatgatgatgccatataacatgcaaaggcagcctggccagaggagtggtcctccgcat
ggaggaatgcctagacatctgcataatcctcaccagatgtttcaccaaaatgccaaccag
ggcttcagacacatgccaaatcgtaggaatggtgtggccaacccagcaatgttgcatcag
caccatcgcttctctagcccaatgcagccaatgcaacaagctgtcaagcatgtggtgccc
gtgggggaattgcaagctccaagcaataaccttcagacttccttggcttctgcgaacccg
gaacaacaacgagagattcttggcgacatgttgttcccgctcgtcgaacagctggtgaac
gagaaagcttataaggtgactgggatgctgcttgagctggacaagactgaagttctgaac
ctcgtagagtctccagatactctccgggacaaggttgctgaggccatgaaggtgctggag
ttggaggctaccgccaccgccgccgccgccgccgccgcttcaggctccggcgacggcgac
gccgccgcgccgtcctcctccagcgccgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (72)   
   KEGG ORTHOLOGY (1)   
   RefGene (67)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (90)   

Download RDF
DBGET integrated database retrieval system