KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4344376
Entry
4344376           CDS       T01015                                 
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4344376
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4344376
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     4344376
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII SAWADEE
Other DBs
NCBI-GeneID: 4344376
NCBI-ProteinID: XP_015646417
Position
7:29468644..29475499
AA seq 1334 aa
MLKGPVDHRSHPISATPFEVFYDGSWHGVNCIRIRNGNLFVKFIYSGSTVEHNVDGDCLR
LRSRRATCSDCSNVLKPGVDVCVQSSHTPEASSQGGTNASVLLRHDARLITIKKNHQEDK
CLCLFVVILYKNQCPGNAEKVITDRRAEVVTINDIFLLQKLQPEVHEGSMKWSFSKDRLS
LNKGRLISARFSSEITHLIVLSILRGMEFNIKLVEGQIVYQIIKGDQAQWNLDSMAIPPG
FGNTMEIISFQLRDEALRPTITNIPITHVKKNNITEDMRFTVKSEMDSELDRALDVEILY
EHVDLRRSKRLKTQPDRFTSYDTPRFLSGYKKKEASSSPTKHVRGAVHCDSPVDDSKKEV
ESCCVEIPGNVTQKQTGVHSPMVDEKSNSPEGQHKNTTKRTTCSLVKEKASSPEGQHEKT
TKRTTCALPVKEKASSPEGQHKNTIKRTTCSLPVKEEPSSVEIEEKSSKEQSAPEFHIPR
TPAQNKEKHNRPPFSCKPKLFTSSGTLGVNCEPAFCQKVGGKRKRHMCEREYKQMIDQCI
GNIESEMERDSMFNFDANMMNYVQHSYREEDFTWPPSADNQEVEEDELEELWKEMDYSLT
TLALLEQKQVMAQSRINMLVDNFDGLRLDCLTLTDDYRCYYQKKEKFAESGSVNESTDYF
GKVGGIPCHHECILDEELGLACRLCNVVCTEAKDIFPEMFNGNDYKDRPGCSNICLDDDI
LDPSLLANLAPELSELKNSGSVWSAISDLDPKLLPHQRKALDFLWKNLAGSIQVEGMDNS
NVSTGGCVIAHTPGSGKTLLLISFLVSYMKAHPRSRPLVLTPKAAIHTWKREFEKWGISL
PLHVFHHANRSGKPLGAMDSKLRSLLNNFHRPTWTNMRLMDSLDKLFKWHAHPSVLLMTY
SSFLGMTKQDSKVRNRYREFIAEVLMNNPGLLILDEGHNPRSNKSKLRKLLMKVKTEFRI
LLSGTAFQNNFEEYFNTLCLARPRFIGDIMSELVPERKRETVGRRAKHQEAVARRAFVEK
VGQKIESDNKHIRSDGISLLNKLTRGFIDSFEGAKLINLPGIHVYTVFMKPTDIQEEMLA
KVTMPKLGSSRFPLEVELLITIGSIHPWLIKTTKAVSTFFSPAEVKKVERYKRDFAAGCK
AKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFGWRLGEEVLVLQGDQELPVRS
DVMDKFNGDSAGKRKVLIASTTACAEGISLTGASRLVMLDSEWNHSKTRQAIARAFRRGQ
ERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVFLGRYVDDSSQNRVTDIDDEVLKELAD
EDHTGTFHMIVKQD
NT seq 4005 nt   +upstreamnt  +downstreamnt
atgctcaagggacctgtggaccatcggagccatcccatcagtgcaactccatttgaggtg
ttttatgatggatcatggcatggggtaaattgtataaggataaggaacggcaacctgttt
gttaaatttatctactctggatcaacagtcgagcataatgttgatggggattgtctacgc
ttacggtcgagaagggcgacttgttctgattgttcaaatgttctcaagccaggtgttgat
gtctgtgtgcagtcatctcatacacccgaagcaagttcacaaggaggaacaaacgcttct
gtgttactgcgtcatgatgcaaggcttatcacaatcaagaagaatcatcaagaagataag
tgtctctgcttgtttgttgttatactctacaagaaccagtgtcctggcaatgcagaaaaa
gtgataactgatagaagagcagaggtagtaaccataaacgatattttcctcctgcaaaag
cttcaacctgaggtccatgaaggaagcatgaaatggagtttttcaaaggatcgcctctct
cttaataaaggcaggctaataagtgctagattctcctcagaaattacacatctgatagtc
ttgtcgatcttgaggggaatggaattcaacatcaaattggtagaaggccagatcgtttat
caaataatcaaaggagatcaagcacaatggaatcttgattccatggccatccctccaggc
ttcgggaatacaatggagataatatcattccaattgcgtgatgaggccttgcgcccaaca
atcacaaatatccctatcactcatgtgaaaaagaacaatatcacagaagacatgagattc
actgtgaagagtgaaatggatagtgaactggatagggcattagatgttgagatcttgtat
gagcatgtggatctgaggcgttcaaagcgcttgaagactcagccagatcgctttacaagt
tacgatacacctaggttccttagtggctacaagaagaaagaagcaagttcatcacccacc
aagcatgtaaggggagctgtgcattgtgattcaccggtagacgattccaaaaaagaagta
gaatcatgctgtgtagagattccagggaatgttacacagaagcaaacaggtgtacactct
cccatggtcgatgaaaagtcaaactctccagaaggacagcataagaacacaactaagaga
actacatgctctcttgtgaaggaaaaagcaagctctccagaaggacagcatgagaaaaca
acaaagagaactacatgcgctttgcctgtgaaggaaaaagcaagctctccagaaggacag
cataagaacacaataaagagaactacgtgctctttgcctgtgaaggaagagccaagctca
gtggaaatagaggagaaaagctcaaaagagcaaagtgcaccggagtttcacattccacgg
acacctgcacagaataaagagaagcataatcgtcctcctttctcatgtaagccgaagcta
tttacttcatcaggcacccttggtgttaactgtgaaccagcattctgccaaaaggtgggc
gggaaaagaaagaggcacatgtgcgagagagaatacaaacaaatgattgaccaatgcata
ggaaacattgagagtgaaatggagagggactctatgtttaacttcgatgccaatatgatg
aattacgttcagcattcttatcgagaagaggattttacatggccaccttctgctgataac
caagaggtggaggaggatgagcttgaagaactgtggaaagaaatggattattcactgacg
acattagcacttcttgagcaaaagcaggtgatggctcaaagtaggataaacatgctggtg
gataattttgatgggttgaggctggattgtttaactttgacggatgattacagatgctat
tatcaaaaaaaagaaaagtttgcagagtcaggatcagttaatgagagcaccgattatttt
ggaaaagttggaggaataccatgccatcatgaatgcatactggatgaggagcttggacta
gcatgcagattatgcaatgttgtatgcactgaggcaaaggatatatttccagaaatgttc
aatggaaatgactacaaggacagacctggatgcagcaatatttgccttgatgatgatata
cttgatccttctcttcttgcaaacttggcaccagagttgtcagaattgaagaactcaggg
agcgtgtggagtgcaatatctgatcttgatccaaagctgcttcctcaccagagaaaagca
ctagattttctgtggaaaaatttggcggggtcgatacaggttgaaggaatggataactca
aatgtcagtacaggtggctgtgtgatagcacacactcctggatctgggaaaacactgctg
cttatctcatttctggtgagttacatgaaagctcacccaagaagccggccattggtcctt
actccaaaagctgcaattcatacatggaagagagaatttgagaaatggggcatttcactt
cctttacatgtgttccaccatgctaacagaagtggcaagccgttgggggcaatggattct
aaactgcggtcgttattaaataattttcacagaccaacctggacaaatatgcgccttatg
gattctttggacaaactattcaagtggcatgcacatccaagcgtcctcctcatgacatac
tcatctttcttagggatgacgaaacaagactcaaaagtgcgaaaccgataccgagaattt
atcgcagaggtcctgatgaacaaccctggactcttgattcttgacgaggggcacaaccca
agaagcaacaagtccaagttgaggaagctgctgatgaaggtgaagactgagttcagaatc
ctcttatctggcacggccttccagaacaactttgaagagtacttcaacaccctatgtttg
gccagacctcggtttatcggtgatatcatgagtgaactagtgccagagaggaaaagagaa
acagttggcaggagagccaaacatcaagaagcagtggcacgccgcgcctttgtggagaaa
gtgggccagaagattgagtctgacaacaaacatatcagaagtgatggtatcagtttgcta
aacaagcttactcgtggattcatagattcattcgagggagcgaagctgatcaaccttcca
gggatacatgtgtataccgtgttcatgaagcccacggacattcaggaggagatgctggca
aaggtaacaatgcccaagctcgggtcgtcccggttccctctagaggttgagctgctcatc
acgattggctccatccatccttggctcataaaaacgacgaaggccgtcagcaccttcttc
agtccagccgaagtgaagaaggttgagaggtacaagcgagacttcgcggcggggtgcaag
gccaaatttgtgatcgatctgctgcacaagtcgtcgttcagaggggagagggtgctgata
ttctgccacaacgtgtccccgatcacgttcctggtgaagctgatagagatggtgtttggg
tggcggctcggggaggaggtgctggtgcttcagggtgatcaggagctgcctgtccggtcc
gatgtgatggacaagttcaacggcgacagcgcggggaagaggaaggtgctgatcgcgtcg
acaacggcatgcgcggaggggatcagcttgacaggcgcgtcgaggctggtgatgctggac
tcggagtggaaccactccaagacgaggcaggcgatcgcgcgggcgttccggcgtgggcag
gagaggacggtgtacgtctacctcctggtggcatctgggacatgggaggaggagaagtac
aacagcaacaggaggaaagcttggatgtccaaaatggtgttcctgggacgctatgttgat
gattcctcgcaaaaccgtgtcactgacatcgatgatgaggtcttgaaggagcttgccgat
gaagatcacaccggcaccttccatatgattgtcaagcaagactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (55)   

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