KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4345227
Entry
4345227           CDS       T01015                                 
Name
(RefSeq) protein SMG7 isoform X1
  KO
K14409  protein SMG7
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    4345227
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4345227
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     4345227
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     4345227
SSDB
Motif
Pfam: EST1_DNA_bind EST1 TPR_17 TPR_2
Other DBs
NCBI-GeneID: 4345227
NCBI-ProteinID: XP_015650035
UniProt: Q0J6K0 A0A0P0XE96
Position
8:complement(12724300..12732713)
AA seq 1018 aa
MMTVPMDKATASPSSRELAQRLLKKNAEHESRLRRSAQSKVPSDPNIWFQMRENYEKIIL
ADHDFSEKREIEYLLWQLHYKRIEEFRAHIVSAGKNNANPDRIKRIRSSVRSFLSEATGF
YHDLMLKIRSTYGLPLGYFSEGPDSSVVPDKDGKKVVGVKKGLLSCYRCLIYLGDLTRYK
GLYGDVDYASREYAAASIYYKEAASLCPSNGNPHHQLAILASYAGDEVTAIYRYFRSLAV
DNPFSAARENLILAFDKFHMQNHDIYAQLSGNSKVPNAKSLPSRSVGRARGRGETRFQPK
GSSTEENSKEREHSIQEILKAFYIRFVRLNGILFTRTSLETFGELSATVISDLQILLSSG
PYEELNFGVEAAENALSVVKLIAILIFTVHNANKDADNQSYAEIVQRRVLLQNAFAAAFE
FVGYLLKRCAELHDVASSIYLPAILVFIEWLACHPDFVASSEMDEKQADARSFFWSQCVP
FMNKLILTGLAHVDGDNDETCFFDMGTYEEGETGNRLALWEDVELRGFSPLVPAQGILDF
STKQGFGSDGGTKEKKARVERILAAGKALLNFVQIDQLRIYFDASSKKFLMASEPPPPAS
SVPLVVSSNAQTTNHIQQEPEVSSKIGSVAEDLGVLQSKAQLFLDGDDDEEIVFKPPVSE
KLPRVTSEQTSNELLQPVVVSDVNWSNDGAPPPMTFQSNGPVLTPNVYVQSLPISSLGWA
ANAGQHVILDVGARSTSDIFESLKAPDHNWVSTGAPLVGSLDTVPMASFSNIISDQRTPP
SSLGCFSNPDNTAILPGQDSFLLSALNNVNIGASGFLDQRVNGGLSGLQSVGNVPQVSAQ
ATMNSTNPMIGQYKHTEVTIPSAFYSVLPSVVSSDGVSKKNPVSRPGRHVGPPPGFNNAP
PKRQDDSILAGNGQHVQTNDGIWLDGYRSSLDYVNNQRFAHSNVTTASSTFTTPFPFPGK
QAFSMHPRGSDEKQWQDFHLFGPTKQLPELNFQQGNQQNGPLAEQLPAQSAWSGNYLV
NT seq 3057 nt   +upstreamnt  +downstreamnt
atgatgaccgttccgatggataaagctactgcttccccatcatcaagggagcttgcacag
cggctcttaaagaagaacgctgaacatgaaagtcgtctgcgaaggtcagcacagtccaaa
gtgccatcagatcctaacatatggtttcagatgcgtgagaactatgaaaagataatcctt
gctgatcatgacttctctgaaaaacgtgagatagaatatcttctgtggcagttgcactac
aaaagaattgaggaattccgagctcatattgtctctgctgggaagaacaatgccaatcct
gatcggatcaagaggatcagatcttctgttagaagtttcctctcagaagcaactggtttc
tatcatgacttgatgctgaaaattcggtctacttatgggcttccgttgggctacttctct
gagggtcctgatagttctgttgttcctgataaagatgggaagaaagtggttggggtgaaa
aaaggcttgttgtcatgctatcgctgtttgatatatttaggagatcttacccgatacaaa
ggtctgtatggggatgtggattatgcaagtcgtgaatatgctgcagcctctatctactac
aaggaagcagcttcgctgtgcccttcgaatggcaacccacatcatcagcttgcaatactg
gcatcatatgctggagatgaggtaacagctatctataggtacttccgtagcttagctgtg
gataatcctttttctgcagcgagggaaaacttgattctcgcatttgacaagtttcatatg
cagaatcatgatatctatgctcagctatcaggtaatagcaaggttcccaacgctaagagc
ttgccatccagatcagttggtagggccagaggaaggggtgagacaagatttcagcccaaa
ggttctagtacagaagaaaattcaaaggagcgagagcacagtattcaagaaatactgaag
gctttctatattcgatttgttcgcctcaatggaattcttttcacaaggacaagcttggaa
acatttggggagttgtctgctacagttatcagcgatttgcaaattcttctttcatctggt
ccttacgaggagcttaattttggtgttgaggctgctgaaaacgcgctttctgttgttaag
cttattgctatccttatattcacagtgcacaatgcaaacaaagacgcagataatcaatca
tatgctgaaattgtgcaacgcagagttcttcttcaaaatgcatttgctgcagcctttgaa
tttgttggataccttctcaaaagatgcgcagagcttcatgatgttgcatcaagtatctac
ttgccagctattttggtcttcattgaatggctggcgtgccatccagattttgtggctagt
tctgagatggatgaaaagcaagccgatgcaagatctttcttctggagtcaatgcgtgcca
tttatgaataagctcattttgactggtctcgcacatgtcgatggtgataatgatgaaact
tgcttttttgacatgggcacatatgaggagggtgaaactgggaacaggcttgcgttgtgg
gaggatgttgagttaagagggttttcgcctttggtacctgctcaaggtatcttggacttc
tccaccaagcaaggttttggaagtgatggaggtaccaaggagaaaaaagcacgtgtagaa
aggattcttgctgcagggaaggcgctgttaaatttcgttcaaattgatcagctgcgaata
tattttgatgcatcctcaaaaaagttccttatggcttcagaacctcctcctcctgcttct
tctgttcctcttgttgtatcttccaatgcgcagacaacaaatcacatacaacaggaacct
gaagtctccagtaaaattggttctgtcgcagaagatctaggtgtgcttcagtcaaaggca
caactctttcttgatggagatgatgatgaagaaatagttttcaagcctccagtttctgaa
aagcttccgagagttacttcagaacagactagtaatgagttattacagccagtggtggtg
tctgatgtcaattggtcaaatgatggtgcaccaccaccaatgacatttcagagcaatgga
ccggttctgactcccaatgtttatgttcaatctctcccaatctcttctcttggttgggca
gccaatgctgggcaacatgtgattcttgatgttggtgcaaggtcaacatctgatattttt
gagtctctgaaagcacctgatcataactgggtaagcactggtgcaccacttgttggctca
ctggatacagtccctatggcgagcttttccaatataatttcggatcagcgtacacctcca
tcgtcactcggttgtttcagtaacccagataatacagccatactccctgggcaagattca
ttcttattgagtgcattaaacaatgttaacataggtgcaagtggatttctggatcaaaga
gtgaatggtggactcagtggattacagtctgtgggaaatgtgcctcaggtatctgctcaa
gctactatgaatagtacaaatccaatgattggtcagtataaacatactgaagttaccatc
ccttctgccttctattcagttctgccgtcagtagtatcttctgatggtgtatcaaagaaa
aatcctgtcagccgtcctggaagacatgttggccctcctccaggatttaacaatgcccct
ccaaagcgacaggatgattccattttagctggcaatggccagcatgttcagaccaatgac
ggcatctggttggatggctacaggtcatcactggattatgtcaataatcagcgttttgca
cattcaaatgttaccactgccagcagtactttcaccactccctttccttttcctggaaaa
caagctttcagcatgcatcctagaggtagcgatgaaaaacagtggcaggatttccacctt
tttgggcccacaaagcaacttccagaacttaattttcagcaagggaaccagcaaaatggt
ccactggcggaacaattaccagcacaatctgcatggtctggcaattaccttgtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (36)   

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