KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4347482
Entry
4347482           CDS       T01015                                 
Name
(RefSeq) DNA topoisomerase 3-beta
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4347482
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4347482
   03400 DNA repair and recombination proteins [BR:osa03400]
    4347482
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     4347482
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Topoisomerases
   4347482
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     4347482
   FA (Fanconi anemia) pathway
     4347482
SSDB
Motif
Pfam: Topoisom_bac Toprim DUF5795
Other DBs
NCBI-GeneID: 4347482
NCBI-ProteinID: XP_015612275
UniProt: Q0J0S6
Position
9:19369184..19382950
AA seq 866 aa
MAPTVLMVAEKPSIALSIASALSGGRMSTRKGSTDVHEFDGMFQGSHAFFKVTSVIGHVL
SVDFPPAYQNWEGTDPMDLFVAPVLRSECNPKAHIRRHLAQEARGCTYLVLWLDCDREGE
NICYEVIDCTGIPKSEVGRRIFRAKFSSVTEKDIMDAMNNLVLPSKDEALAVDARQEIDL
KVGVAFTRFQTRYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYQQITTFKPEKFWSLKTY
VIKDGNEIQLEWDRKKLFDFDVTVMFQKMVASDGILKVTDISVKEECKARPPGLNTVNLL
KVASSALGIGPQTAMHLAERLYTQGFISYPRTESTAYPSSFDFRSALAALAHNPLWSNDV
RTLLDTGFVKPKQGHDAGDHPPITPMRLATEEALGTDAWRLYQYICQHFIGTVSPDCRYT
RTSIEFTSGGETFHCVGNRVTSKGFTSIMPWLAVSENNIPAYKKGDAVSIHKVDIYEGST
TPPDYLSESELISLMEKNGIGTDASIPVHVNNICERNYVQVNSGRRLVPTPLGTTLIRGY
QCIDADLCLPDIRRFIEQQITLIAKGEADHLQVVQHVLQQFMKKYSYFVKKIENMDALFE
AQFSPLADSGRLLSKCGKCARYMKYISTQPMRLYCVTCEEVYYLPQNGSIKLYKEIICPL
DGFELLLFSMVGPDAKSFPLCPFCYNSPPFEGIDKLFGALKLDDTGKVGKGAGMPCFLCL
HPTCKQSMITQGVCACPECTGTLILDPVSAPKWRLYCNRCNCIVLLPHAAHKISTTDKKC
PTCESTIIEVDFNKKTTPLKDGATLHEGCILCDELLHSLIEMKHGKSFFMRRGRGRGRGR
GRGRGSSRGRRGSSRHDDPKMSFRDF
NT seq 2601 nt   +upstreamnt  +downstreamnt
atggcgcccacggttctgatggtcgcggagaagcccagcatcgcgctctccatcgcctcc
gccctctccggcggccgcatgtctacaaggaagggaagtacagatgtccatgagtttgat
gggatgtttcagggttctcatgcatttttcaaagtgacatcagtcattggacatgtcttg
agtgtagattttccacctgcatatcagaattgggaagggactgatccaatggatctattt
gtggctccagttctgcgatctgaatgcaaccctaaggctcatatccgcaggcatctagct
caggaagctcgaggctgcacctacttggtactctggcttgattgtgaccgagaaggagaa
aacatatgctatgaagtaattgattgcactggaattcctaaaagtgaggttggcagaaga
attttccgagccaaattttcgtccgttactgagaaagatataatggatgctatgaataat
cttgttttgccaagtaaagatgaggcactagcagttgatgctcgccaagaaattgacttg
aaggtaggagtagcatttactcgatttcaaaccagatattttcaaggaaaatatggaaat
ctcgactcaagagtaatttcgtatggtccatgccaaacacctacacttggattctgtgta
caacgctatcagcagattaccacattcaaaccagagaaattttggtccttgaaaacttat
gttatcaaggatggtaatgaaattcagcttgaatgggataggaagaaactttttgatttt
gatgttactgtaatgttccaaaagatggtggccagtgatggtattttaaaagtaaccgac
atatcagtgaaggaagagtgcaaagcccgcccgcctggccttaatacagttaatttgctt
aaggttgcatcaagtgcactaggtattggacctcagacagcaatgcacttggcagaaagg
ctttatacccaaggattcatcagttatccacgtacagagagcactgcctatccttcatca
tttgattttagaagtgcactcgctgcacttgcacataatcctttgtggtccaatgatgtt
cggacgttactggacactgggtttgttaagcccaaacagggtcatgatgctggggaccat
cccccaataactccaatgagattggcaacagaagaagctttgggaactgatgcttggagg
ctgtaccagtacatttgtcagcattttattggcactgtcagtcctgattgtagatatacg
aggacttccattgagttcacttcaggtggagagactttccactgtgttggcaaccgggtc
acttctaaaggatttacttctattatgccatggctggctgtgagtgagaataatatccct
gcatataaaaagggcgatgctgttagcatccataaggttgacatatatgagggtagcacc
acacctcctgactaccttagtgagagtgaattgatctctctcatggagaagaatggcata
ggtacagatgcatcaattcctgtgcatgtaaacaacatctgcgagcgtaattatgttcag
gtgaattccggaagaagattagtaccaacacccctgggaactacattgataagagggtat
cagtgcattgatgctgatctgtgcttaccagatatccgaaggtttattgagcagcagatt
actctaattgcaaaaggtgaagctgaccatcttcaagttgtgcagcatgttcttcagcag
tttatgaaaaagtactcgtactttgtgaaaaagattgaaaacatggatgctttgttcgaa
gcacagttttcacctttggctgactctggacgtttactgagcaagtgtggaaaatgtgct
cggtatatgaagtacatttccactcagccaatgaggctgtactgtgtaacttgtgaagag
gtctactatcttccccagaacggttccattaagctttacaaggaaatcatttgccccctt
gatgggtttgagttgctactgttttcaatggttggccctgatgcaaaatccttcccactg
tgtcctttttgctacaacagtcctccatttgaaggcatcgacaaactcttcggtgcactc
aagcttgatgacactggcaaggttgggaaaggggctggcatgccatgcttcctctgcctg
caccccacatgtaaacaatctatgatcactcaaggagtttgtgcttgtcctgagtgtact
ggtaccctaattcttgatccagtcagcgcacccaaatggcggctttactgcaatagatgt
aactgcattgtcctgctcccacatgccgctcataagatcagtactacagataagaagtgc
ccaacatgtgagtctactatcatcgaagttgattttaacaagaaaactaccccacttaag
gatggagctactttgcatgagggttgcatcttgtgcgatgagctgttgcattcgctcatt
gagatgaagcatgggaagtcattttttatgaggagaggtagaggaagaggcaggggtaga
ggtcgagggagaggaagcagtaggggaagacgggggagctcaagacacgatgatcctaag
atgagcttcagagatttctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (42)   

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