KEGG T01358: OT_ostta10g01860

Ostreococcus tauri: OT_ostta10g01860

Entry

OT_ostta10g01860  CDS       T01358

Name

(RefSeq) Nucleotide-binding, alpha-beta plait

K03015

DNA-directed RNA polymerase II subunit RPB7

Organism

ota Ostreococcus tauri

Pathway

ota03020

RNA polymerase

ota03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:ota00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    OT_ostta10g01860
  09124 Replication and repair
   03420 Nucleotide excision repair
    OT_ostta10g01860
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ota03021]
    OT_ostta10g01860
   03019 Messenger RNA biogenesis [BR:ota03019]
    OT_ostta10g01860
   03400 DNA repair and recombination proteins [BR:ota03400]
    OT_ostta10g01860
Transcription machinery [BR:ota03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     OT_ostta10g01860
Messenger RNA biogenesis [BR:ota03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     OT_ostta10g01860
DNA repair and recombination proteins [BR:ota03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      OT_ostta10g01860

SSDB

Motif

Pfam:

PHM7_cyt RRM_1

Other DBs

NCBI-GeneID:

34946191

NCBI-ProteinID:

XP_022839799

Position

10:complement(302502..305972)

AA seq 1156 aa
MADDADGTDAPVPLAGGLVRALSRVATVIRGNENARANEEANASAAPAEALERAPTKRER
NMDTTATKLDENAVRVDALSKTKSKRMQKILAKRVEEEAVASDEEEEDPAFTEHREAETV
PEYTWTATMRRRLENNECDVAFDEDSEMAKAAEKSEGASTDNDEEEGANVPYRGGEPTQL
TRMKSRINSMNAPTNSAGAPIRNPNADLSEKQDVVEDSYFLAVMSDKLPAYKRPRRHIAR
LENLESAVLDKDHKQLPVWSTTKSDMDVLGPGIGLWFAQLKRLGIVFFVLSCLASVFIAH
YVHLAKTNTVDIDPEIKTTLGMTAVSTYASVYGVDIRTIMAFLSCLDVFIVLCFMAVGSG
LARSIRAFVIRVDEALLTLSDYSLQVDGLPNNATEEEVREHFEEFGPVADVVIVRAFGRL
LRMRMARARLFKKAEILKAELSAMRHNLRKKGESLEENRSFNRKWKEFYKIRDAIMDLKE
KIDKTAQMPFDAFDVVTAFVTFEQETDKLACRDEYFAYFNCFRTERTMFRVEKTISENGQ
ESMTYHYLKVKQAGEASDILWENMTNVSWKNYLIRRSTAALGIITLLVGAIVLVVLTTTW
SKAGAQLVVSCNGLYTLNGNKNLYCPAIWDLDKDLSSADLRVISNENFRSQIDSSDCHKY
VESAVWSYDMTQYSPYSAAIYSSSLTTEQARTAGYMDDKWNGGLDSTTTADECAAKVCYD
CMCQSAALSGSVSDVCRDYYYDQVVIILFEVGRLTITALTSITLLWASAKFALFARFKTV
SATERATSRYAFYTLLTNVLILPLLVNIDIEGLENFPILFRGSHQDVTLDWYALVMRSIM
ISAFINACYFGPWRLVGAWVQQFSRYTTSKWCKTQQKLNGLYARPKFTLAERYGQMMTVI
FSTVVLFAAAPILIPVAALYCLLSYWSDKTLILRYCRFPALYSHTLAQQFLFYFPYACLA
HFAFAAWVFSQWDVPSYFLESLDGWDESLQSQNEADFWSIRANMTRYAQLDFEERFYRVN
GLIQLIPLLIYVAYHLIKSFLSGLGRTMLYVLGCARCLESDWSADVMFHNFTTVRDNMYK
NDESVDGILSGLPSYRVHDNPEYVNLFPEARRFEQEQSFSKTAQEMPGEEHEEDSYVEKE
SSAVRNMWSTFAGKKE

NT seq 3471 nt +upstreamnt +downstreamnt
atggcggacgacgccgacgggacggatgcgcccgtcccgctcgcgggtgggctcgtgcga
gcgctctcgcgcgtggccacggtgatccgagggaacgagaacgcgcgcgcgaacgaggag
gcgaacgcgagcgcggcgccggcggaggcgctggagcgcgcgccgacaaagcgcgagcgg
aacatggacacgacggcgaccaagttggacgagaacgcggttcgcgtcgatgcgttgtcc
aagacaaaaagtaaacggatgcagaagatactcgcgaagcgagtggaagaggaggcggtg
gcgagcgatgaggaggaggaggacccggcattcacggagcatcgcgaagccgaaaccgta
ccggagtacacttggacggcgacgatgcgcagacgcctcgagaacaacgagtgtgacgtg
gcgtttgacgaagattctgagatggcaaaggcggcggagaagagtgaaggtgcgtctacc
gacaacgacgaagaagaaggcgcaaacgttccttacagaggcggcgagccgacgcagctg
acgagaatgaagagcaggatcaactccatgaacgcaccgacgaattcggccggtgcgccc
atcaggaacccaaatgcggacttgagcgagaagcaagacgtggtggaagattcgtacttt
ctagccgtcatgagcgataaactccctgcgtataaacggccaagacgacacatcgcccgg
ttggagaatcttgaatctgcggttctcgacaaagatcacaagcaactgccggtttggagc
accactaaaagcgacatggatgttctaggaccggggattggtctgtggtttgctcagctg
aaaagactaggcatcgtcttcttcgttctgtcgtgcctggcctcagtcttcatagcgcac
tacgtgcaccttgcgaaaacaaacacggtcgacatcgatcccgagataaagacaacgctc
ggtatgaccgcagtgagtacgtatgcgagcgtttacggcgttgacattcgaacaattatg
gcttttctttcttgtctggatgttttcatcgtcctgtgcttcatggcggtgggctcgggt
ctcgctcgcagtattcgcgcgttcgtcatccgagtcgacgaagcgctgctcactctctcc
gactactcgttgcaggtcgatgggctaccgaacaacgctactgaagaagaggtccgtgag
catttcgaagaatttggtcctgtggcggatgtggtcatcgtgcgtgcgttcggtagactg
ctacgaatgcgcatggcgcgggctcgtctctttaaaaaagctgaaattttgaaagcagag
ctaagcgcaatgaggcacaatctccgcaagaagggagagtcactcgaagaaaatcgtagc
ttcaaccgtaaatggaaggagttttataaaattcgtgacgccatcatggatttgaaagaa
aagattgacaaaacagctcaaatgccgtttgatgcgttcgatgtcgtcactgccttcgtt
acttttgagcaagaaaccgacaagcttgcatgccgggatgaatatttcgcctacttcaac
tgctttagaactgagcgcacaatgtttcgcgttgaaaagacgatctcagaaaacggccag
gaaagcatgacgtatcactacctcaaagtgaaacaagccggcgaagcgtccgatatcctg
tgggaaaatatgacaaatgtttcgtggaagaattacttgattcggcgctcgaccgcggcg
cttggcatcatcactctcctcgtcggcgccattgttcttgtcgtactgacgacgacctgg
tcaaaggctggggcacaacttgtcgttagctgcaacggactctacacattaaatgggaac
aaaaacttgtactgtccggccatctgggacctcgacaaggacctttcgtcagccgatctc
agagtcatctcaaacgagaacttcagatcacagatcgactcctccgattgccacaagtac
gtcgagtccgcagtttggtcttatgatatgactcaatattctccatactccgcggcaata
tactcatcttcactgactactgaacaagctcgaaccgctggatatatggacgacaagtgg
aacggtggtctggattcgacgacgaccgcggacgaatgtgcggcgaaggtctgctacgat
tgcatgtgccaatccgctgcgctttcggggtcagtgtcggacgtctgtcgagactactac
tacgatcaagtcgtcataatacttttcgaagttggtcgtctcacaattacggctctcact
tcgatcactttactgtgggcgtcagctaaatttgcgctctttgctcgcttcaagactgtt
tctgccacggaacgagcgacgagtaggtacgccttctacaccctactgacgaacgttttg
atcctgccgttgctcgtgaacattgacattgaaggcttggaaaacttccccatccttttc
agaggtagtcatcaggacgtcaccctcgattggtatgctcttgtcatgaggtccataatg
atttccgctttcatcaacgcctgctacttcggtccttggcgactcgtcggggcttgggtt
cagcaattttctcgatacactacgtctaagtggtgcaagacgcagcaaaaattgaatgga
ttgtacgcgagaccaaagttcacgctagctgagcgatacgggcagatgatgactgtcata
ttttccaccgtcgtgctctttgccgctgctccgattctcatccccgtggcggcgctatat
tgcttactctcctactggtccgacaagacgctgattctgagatactgccgcttcccggca
ctgtactcccacactttggcgcagcagttcctgttttacttcccttacgcatgtctggcg
cactttgcgtttgcggcgtgggtattttcgcagtgggacgtcccgtcttactttctcgaa
tctctcgatgggtgggacgagagcctccaatctcagaacgaagccgacttctggtcgatt
cgagcgaacatgacgagatacgcgcaattggatttcgaagaacgcttctaccgcgtcaac
ggactgatccagctgattcctctcttgatatatgttgcttatcacttgatcaagtcgttt
ctgagtggtttgggaagaaccatgctgtacgtgctcggttgcgctcgatgcctcgagtct
gactggagtgcggatgtgatgttccacaacttcaccaccgttcgcgataacatgtacaag
aacgacgagtccgtggacggaatcctctccggcttgccttcgtatcgcgtgcacgataat
ccagaatacgttaatcttttccccgaggcgcggagattcgagcaagagcaatcgttctca
aagactgctcaagaaatgccaggagaggaacacgaggaggactcctacgtggagaaagag
tccagcgcggtcaggaacatgtggagtacgttcgcgggaaaaaaggaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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