KEGG T00689: Oter

Opitutus terrae: Oter_4627

Entry

Oter_4627 CDS T00689

Definition

recombinase D (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

ote Opitutus terrae

Pathway

ote03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:ote03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 UvrD_C_2 AAA_19 AAA_11 Viral_helicase1 Helicase_RecD HHH_5 AAA_22 PIF1 T2SE AAA_16 NTPase_1 AAA_28 DUF2075 AAA_29 AAA AAA_18 PhoH AAA_17 DUF258 MobB HHH_2 UvrD_C ArgK AAA_3 UvrD-helicase Mg_chelatase AAA_5 cobW Thymidylate_kin NACHT FtsK_SpoIIIE TrwB_AAD_bind ATP_bind_1 KTI12 ABC_tran

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

5943338..5945953

AA seq 871 aa
MGVPPMSSYRGHFSPFRSRARRPCHRLRPRSALPFGVAPGIPSLSAVASSPAATLTGVVE
RIIFLNEENHYTIAEFRPDADKKSVPKERPEPVTIVGPLPGVECGETLHLTGEWTRHAQH
GAQFKVLGFKSELPSSVYGIRKYLGSGLVPGIGKVYANKIVDAFGTDTFRILSEESGRLR
DVDGIGRKRATAIKAAWDAKRTERELYIFLQTYGVTPGQCVKIAKHFGPSAKNILTQEPY
RAAREIDGIGFKTADRIAINLGFANDAAPRLDAGLIFALETLQEEGHTAFGESDLCDYAA
NLLETDSRLICARIDALVEAKQLVRHGGSGVAGVVDPGHGDVTPSSRPARRDEGVAAPSA
SGRVSVAAVADRGPGSTSPATPNRTSGSQLSALSSRLIQLPHNDRAEQKIAEVVQRLTRV
ASGLPPIKTDAAVTWAEQKAGFTFHELQRRAVRAALTSKFSILTGGPGTGKTTILRALVE
ILKAKKVRVHLAAPTGRAAQRLAETTGGYASTIHRLLKWDPAAGGFIANESTPLSTDFLI
VDEASMLDTRLASALLQAVPARAHLLLVGDIDQLPSVGAGNVLKDLIVVAEGSAPHPQLS
TLNSQPAALRAAIPVTRLSVVYRQKDHSGIVSTAHAINSGDASLPPAFGEIADVPPWSDL
AFITAADAEDCLRKVIQLCTEFVPQKLHWPNPIADVQVLAPMHKGVAGVANLNVQLQAAL
NPHARGLRAATGEYRPADKVIQLRNNYDKNLFNGDIGSVVSVDAEHGTMVAEFDGEQHTF
ERGDFSDLALAYTISIHKSQGSEYPVVVIPLLKGHFMMLQRNLIYTAITRGRKKVYLVGE
PAAYAMAVRNSESKQRLTHLREKIVVSSSRA

NT seq 2616 nt +upstreamnt +downstreamnt
atgggcgtcccgcccatgtcgagttaccgcgggcatttttccccgttccgttcacgggcg
agacgcccgtgccaccgccttcggccgcgttccgcgcttcccttcggtgtggcgcccggt
attccgtcactatccgccgtggcttcctctcccgcagcaactctcaccggcgtcgtcgag
cgcattatcttcctcaacgaggagaatcactacacgatcgcggagttccggccggacgcg
gacaaaaagtccgtgccgaaggaacgcccggaaccggtgacgatcgtcggtccactgccg
ggcgtcgagtgcggcgaaacgctgcatctcaccggcgagtggacgcgccacgcgcagcac
ggcgcgcagttcaaggtcctcggcttcaagagcgagctaccgtccagcgtctatggcatc
cggaaatacctcggcagcggactcgtgcccggcatcggcaaggtctacgccaacaagatc
gtcgacgcgttcggcaccgacacgtttcgcatcctgagcgaagagtccggccggctgcgg
gatgtcgacggcatcggccgcaaacgcgcaaccgcgatcaaggcggcgtgggatgcgaag
cggaccgagcgcgagctctacatttttctgcagacctacggagtgacgcccggccagtgc
gtgaagatcgcaaagcacttcggcccgtccgcgaaaaacatcctcacgcaggaaccgtat
cgcgccgctcgcgagatcgacggcatcggcttcaagaccgccgaccggatcgcgatcaat
ctcggcttcgccaacgacgccgcgccgcggctcgacgccggattgatcttcgcgctcgaa
acactgcaggaggaaggccacaccgcattcggcgaatcggacctttgcgactacgccgcg
aatttgttggagacggactcgcgactgatctgcgcccggatcgacgctctggtcgaagca
aagcaactcgtccgccatggcggctcaggtgtagccggggtcgttgaccccggccatgga
gacgtgacgccctcgtcgcgtcccgcccgccgcgacgagggcgtcgcggctccatctgct
agcggccgcgtcagtgtcgccgcggtcgccgaccgcggcccgggctcaacgagcccggct
acacccaaccgcacttctggctctcagctctcagctctcagctctagactcattcagctc
ccgcacaacgatcgcgccgaacagaagatcgccgaagtcgtgcagcgtctgacgcgcgtt
gccagcggcctgccgccgatcaagaccgacgcggcggtcacttgggctgagcagaaagcc
ggcttcacattccacgagctgcagcgccgcgccgtgcgcgccgcgctcacgagcaagttc
agcattctcaccggcggacccggcacgggcaaaaccaccatcctgcgcgcactcgtggaa
attctgaaggcgaagaaagtccgcgtgcacctcgcggcgcccacgggtcgcgccgcgcag
cgactcgcggaaaccacgggcggctacgcctcgaccatccaccggctgctcaaatgggat
cccgccgcgggcggtttcatcgcgaacgaaagcacgccactttccaccgatttcctgatc
gtcgacgaagcctcgatgctcgacacgcggctcgcttccgcgctgttacaggcggtgccc
gcgcgcgcgcacctgctactcgtcggcgacatcgaccaactcccaagcgtcggcgccggc
aacgtgctgaaggacctgatcgtcgtggccgaaggctccgcgccgcatcctcaactctca
accctcaactctcaacccgcggcgctccgcgccgcgattcccgtcacccggctctccgtc
gtctatcgccagaaggaccacagcggcatcgtcagcacggcgcacgcgatcaactccggc
gacgcctcgctgccacccgcgttcggcgagatcgccgacgtcccgccgtggagcgatctc
gcgttcatcaccgccgccgacgcggaggactgcctccgcaaagtcatccagctctgcacc
gagttcgtcccccagaaactccactggccgaatccgatcgccgacgtgcaggtgctcgcg
ccgatgcacaagggcgtcgccggcgtcgccaaccttaacgtgcagctgcaggccgcgctg
aatccgcacgcccgcggcctgcgcgccgcgaccggcgaataccgaccggccgacaaggtc
attcagctccgcaacaactacgacaaaaacctcttcaacggcgatatcggttcggtcgtg
tcggtcgacgccgagcacggcacaatggtggcggagttcgacggcgagcaacacacgttc
gaacgcggcgacttcagcgatctcgccctcgcctacacgatcagcatccataaatcgcaa
ggcagcgagtatcccgtcgtcgtgatccctctgttgaagggccacttcatgatgctgcag
cggaatctgatctacacggcgatcacgcggggccgcaaaaaggtctacctcgtcggtgaa
cccgccgcgtacgccatggccgtccgcaacagcgaatcgaagcaacggctgacccacctg
cgggagaagatcgtcgtgagcagcagccgcgcctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-OTE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (37)   
   Pfam (37)   
All databases (47)   

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