KEGG   Octadecabacter temperatus: OSB_00760
Entry
OSB_00760         CDS       T04001                                 
Symbol
rnr
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
otm  Octadecabacter temperatus
Pathway
otm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:otm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OSB_00760 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otm03019]
    OSB_00760 (rnr)
   03016 Transfer RNA biogenesis [BR:otm03016]
    OSB_00760 (rnr)
Enzymes [BR:otm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     OSB_00760 (rnr)
Messenger RNA biogenesis [BR:otm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     OSB_00760 (rnr)
Transfer RNA biogenesis [BR:otm03016]
 Prokaryotic type
  tRNA degradation factors
   OSB_00760 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 FaeA
Other DBs
NCBI-ProteinID: AKS44645
UniProt: A0A0K0Y137
Position
65498..67741
AA seq 747 aa
MIRIPSKAEILTWITENPTKAAKRDIAKAFGIKGAARIDLKRVLRELEDEGKLQKRKSSY
RDANKLPPVSVLEIVGPDSDGDLFARPLEWAGEGDAPQVLMVMKPDEPALGSGERILGRL
TEVRGEEYPYSARLIRRIGTNPLRILGVFRAGAEGGRIVPVDKGSQKEWVVAAGATGDAK
DGELVEAEQAGPKGRMGLPKARIVARLGDPTQPRAVSLIAIHQHGIPDHFPDNVIAEADG
AKPADLKGRDDLRDLPLITIDPWDARDHDDACCAIPNGDGGFALWVAIADVAHYVTPGSE
LDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVDRACIAVEMQIDRDGNKTSQRFV
RGLMKSPASLNYEEVQAAMDGDVNDKVAPLLDDVIRPLYACYDALKKARAVRQPLELDLP
ERKIVLNDDGMVEDVAFRDRLDAHRLIEEFMVLANVAAAETLVAKKTALLFRVHEEPKPE
KLEALRETAEAAGLQLAKGQVLKTAHLNRLLSQASGTDDAELINISTLRSMTQAYYNPEN
FGHFGLALLAYAHFTSPIRRYSDLIVHRALITAHGWGKDGLTPQDEAMLADTAQAISDTE
RRSMVAERDTTDRYLAAFLNDRVGAVMGGRVSGIAKFGVFVKLDETGADGMIPIRNLGAE
YFHYDADSQTLMGSDTGVVIGLGVRVTVKLVEAAPVTGGLIVDLLEIDGKAMPKGKSSYR
GKPPRRKMSSAKKKAAKTARKVKRTRK
NT seq 2244 nt   +upstreamnt  +downstreamnt
atgatacgtattccctccaaagccgagatcctgacatggatcactgaaaaccccaccaaa
gccgccaagcgtgacatcgcaaaggcgtttggaatcaagggtgccgcgcgcatcgatctg
aaacgtgtgctgcgtgagttggaggacgaaggtaagttgcaaaagcgcaagtcgtcttac
cgcgatgcaaacaaactgccgccggtatcggttcttgaaattgttgggcctgacagtgac
ggcgatctatttgcacgccccttggaatgggctggcgagggcgacgcgccgcaggttttg
atggtgatgaagcccgatgaacccgcgctgggttcgggcgagcggattcttggccgactg
actgaagttcgcggtgaagagtatccctattccgcacgtctgatccgccggatcggcacc
aatcctttgcgcatcttgggcgtgtttcgggcaggtgctgaaggtggccggattgttccc
gtggacaaggggtcacaaaaggaatgggtcgttgctgctggcgcaaccggtgatgcgaaa
gacggcgagcttgtcgaagcagagcaggcgggtccaaagggtcggatgggactacccaag
gcgcggatcgttgcacggcttggggacccgacacagccgcgtgcggttagcctgattgcg
atccaccagcatggcatccctgatcatttcccggacaacgttattgccgaagctgatggt
gcaaaacctgctgacctgaaggggcgcgatgatctgcgtgatttgccgttgatcacaatt
gatccgtgggacgctcgtgatcatgacgacgcttgttgcgcaattcccaacggtgatggt
ggcttcgcgctttgggtcgcgattgcggatgttgcgcattacgtgacacccgggtccgaa
ctggaccgcgaggcgcgcaaacgtggcaattccacctacttccccgaccgcgttgttcca
atgttgcctgaccgcttgtctggcgatctttgctcgctccacgaaggtgttgatcgggct
tgtatcgcggttgaaatgcagatcgatcgagacggcaacaaaacgtcccagcgcttcgtg
cgtggtttgatgaagtcgccagcatctttgaactacgaagaagttcaggcggcgatggac
ggcgatgtgaatgacaaggttgcgccgctgctggacgatgtgatccgcccactttacgcc
tgctatgatgcgttgaaaaaggcgcgtgctgttcgccaaccgttggaacttgatctgccg
gaacgcaaaatcgttttgaacgatgacggtatggtcgaagatgtggcattcagggaccgt
cttgatgcgcatcgactgatcgaagaatttatggtcttggccaacgtcgcggctgctgaa
acactcgtcgccaaaaagaccgcccttttgttccgcgtgcatgaagaacccaaacccgaa
aagctggaagcattacgcgaaacagctgaggctgcggggctgcaattggcaaaagggcag
gttcttaagaccgcgcatttgaaccgattgctctcgcaggcgtcgggtacagacgatgct
gagctgatcaatatttcaacactgcgctctatgacccaagcgtattacaatcctgaaaac
ttcgggcactttggcctcgctttactggcgtatgcgcatttcacatcgccgatccgccgc
tactcagatttgattgttcaccgcgcgctgatcactgcgcatgggtggggcaaggatggg
ctgacaccgcaggatgaagcgatgctggccgataccgcgcaagcgatctctgatactgag
cgtcgctcgatggtggctgagcgtgacacgacagaccgctacctcgcggcgttcctgaat
gaccgcgttggtgcggtgatgggcggtcgcgttagtggcatcgctaagttcggggtcttt
gtgaagctcgatgaaacgggtgcggacggtatgatcccgatccgtaaccttggcgccgag
tatttccattacgatgcagacagccagacgttgatgggttccgataccggtgtcgtcatc
gggcttggcgtgcgtgttacggtaaaactcgttgaggctgcgcctgtaacaggcgggctg
attgttgacctgttggaaattgacggcaaagcgatgcccaagggcaagtcatcctatcgg
ggtaagccgccgcgccgcaagatgagcagcgctaagaaaaaggccgcgaaaacagcacgt
aaggtgaagcgcacacgcaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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