KEGG   Octadecabacter temperatus: OSB_17670
Entry
OSB_17670         CDS       T04001                                 
Symbol
rne
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
otm  Octadecabacter temperatus
Pathway
otm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:otm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OSB_17670 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otm03019]
    OSB_17670 (rne)
   03009 Ribosome biogenesis [BR:otm03009]
    OSB_17670 (rne)
Enzymes [BR:otm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     OSB_17670 (rne)
Messenger RNA biogenesis [BR:otm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     OSB_17670 (rne)
Ribosome biogenesis [BR:otm03009]
 Prokaryotic type
  rRNA processing factors
   OSB_17670 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG FXR_C1
Other DBs
NCBI-ProteinID: AKS46312
UniProt: A0A0K0Y647
Position
complement(1739232..1741943)
AA seq 903 aa
MAKKMLIDATHAEETRVVVVDGNKVEEFDFETQSRRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFNEIHPDYYQIPVADREALMAEEKAYAEAMKAEAEAEAEKPKRSRRRRKP
KAAEVDTKDAVATAEPAETPEEDTSGDIAGMETIDLGEDAAIVEGEATSHMETVAETPVE
EPADDGDDNSDDEAAAGSADATAKDESIESVADEDDQEDVRPVRKPRPKRYKIQEVIKVR
QILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKSIAN
EMLVPEGAGLIIRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLKSTAPAQIYEEGNLIKR
SIRDLYSKEIDEVIVEGETGYRTAKDFMKMIMPSHAKNVTNYKDQMPLYARHQVEGYLNG
MFNPTVQLPSGGYIVIDTTEALVAVDVNSGRATKEGSIEQTATKTNLEAAAEVARQLRLR
DLAGLIVIDFIDMDERKNNAAVEKMMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGML
ESTTQPCPHCHGTGLLRSDDNVALGILRQLEEEGVRGRSKEVLIKAPVMIANFLMNQKRE
HIAQIEARYGLSVRIECDPHLVSPDYTLEKFKTATRVVAEVELASVISSETAVMAEVEDV
DVTAEAQPEQQDGEAPTKKRRRRRRRRRGGGGGGENAEANNAENGGENAGEVAAAPVEGE
APAVEAPAVAAEAVAEEAPKPKRTRTRRKKSDAAPAEVAETVETAEAAPEEPAAEEAPAK
PKRTRTRRKKSDDAPAEEVKAEEVKAEEPAPAAEEEPAPKPKKKATRARKKPAAKKAETA
EAEAPAAETSAEAPEPVAEAKPKRVRKTTSKPKPVEAEAEVVEPAAEAKEAPKKRGWWSL
GGR
NT seq 2712 nt   +upstreamnt  +downstreamnt
atggctaagaaaatgcttatcgatgccacccacgcggaagaaacccgcgttgttgtggtt
gacggaaacaaagtcgaggaattcgactttgaaacccaatcccgtcgccagctggccggc
aacatctatctcgcaaaagtaacacgggtcgaaccatcgcttcaggcggcgtttgtggac
tatggcggcaaccgccacggtttcctcgcgttcaacgagatccaccctgactactaccaa
attccggttgctgaccgtgaagcgctgatggctgaagaaaaagcctacgccgaagcgatg
aaggccgaggctgaagccgaagctgaaaagcccaagcgttcacgtcgtcgccgtaagcca
aaagcggctgaggtcgacacaaaggacgcagtcgcaacggctgagcctgcagaaacacct
gaggaagatacctccggtgatatcgcgggcatggaaacgattgatctgggtgaagacgcc
gccatcgtagaaggcgaagccacgtcgcacatggaaactgttgcggaaacacctgttgaa
gagccagcagatgacggggacgacaacagtgatgacgaagctgcggctggaagcgcagat
gcgaccgctaaagatgaatccatcgaaagtgttgccgatgaggacgaccaagaagatgta
cgtcctgtgcgcaaaccgcgcccgaagcgttataaaattcaagaagttatcaaagttcgc
caaatccttctgatccaagtggtcaaagaagaacgcggcaacaagggcgctgccctgacg
acttacctttcccttgctggccgttactgcgtgctgatgccaaacaccgcgcgtggtggt
ggtatttcccgcaagatcacgaatgccgcagaccgcaagaagctgaaatccatcgccaat
gaaatgcttgtacctgagggtgctggcctgatcattcgaacagccggatcgcagcgcacc
aagaccgagatcaagcgcgactacgaatacctgcagcgcctgtgggaacagatccgcgag
cttacgctgaaatccacagcgcccgctcaaatctatgaagaaggcaatctgatcaaacgt
tcgatccgtgatctttatagcaaagagatcgacgaagtgatcgttgaaggcgagaccggt
taccgcaccgccaaagacttcatgaagatgatcatgccgtcccacgccaagaacgtgacc
aactataaagatcagatgccgctttatgcgcgccatcaggtcgaaggctatttgaacggc
atgttcaacccgaccgtgcagctgccgtccggtggctacatcgtgatcgacacgactgaa
gcgcttgtcgcggtggacgtgaactctggtcgtgcgaccaaggaaggctcgatcgagcaa
acggcgacaaagacgaaccttgaggccgctgcagaagtggcacgccaattgcgtctgcgt
gaccttgctgggctgatcgtcatcgacttcatcgacatggacgagcgtaagaacaacgct
gccgttgaaaagatgatgaaagataagctgaaaacggatcgggcacgcattcaggtgggc
cggatttctggttttggccttatggaaatgtcgcgtcagcgtctgcgtccgggcatgttg
gagtcaacgacacagccgtgcccacattgccacggcactgggcttctacgctctgatgat
aatgtcgccctcggcattcttcgccaactcgaagaagaaggcgtgcgcggtcgttccaaa
gaagttctgatcaaagcaccggtgatgatcgccaacttcctaatgaaccaaaagcgcgaa
catatcgcacagattgaggcccgctatggtctgtccgtgcgtattgaatgcgatccgcat
ctggtctcgcctgactacacgcttgagaagttcaagactgcgacccgcgtggttgccgaa
gtagagcttgcatcggttatttcgtccgaaacagccgttatggctgaggttgaggacgtg
gatgtgaccgctgaggcccaacctgagcaacaagacggcgaagcaccaaccaagaagcgc
cgtcgtcgtcgtcgtcgtcgtcgcggcggtgggggcggtggcgagaacgctgaagccaac
aacgctgagaacggtggcgaaaacgctggtgaagttgcagccgcgcctgttgaaggtgaa
gcgcctgcggttgaagcacctgctgtcgccgctgaggccgtggcagaagaggcaccaaag
ccgaaacgcactcgcacccgtcgcaagaaaagcgatgcggcaccagccgaggttgctgaa
acagttgagaccgctgaagctgcaccagaagaacctgcagctgaagaagccccagcgaag
ccaaagcgcacgcgcacccgtcgtaagaaaagcgacgatgcgccagcggaagaggtgaag
gccgaagaggtaaaggcagaagagccagcacctgcagcggaagaagagcctgcgccaaag
ccaaagaagaaggccacacgcgcacgtaagaagcctgcggcaaaaaaggctgagactgct
gaagcagaggctccagctgctgaaacgtcagcggaggcgcctgaacctgtcgcagaagca
aagccgaaacgcgttcgcaagaccacatcaaagccgaagcccgtagaggcggaagcagaa
gtcgtagaaccagctgccgaggccaaagaagcgcctaagaagcgtggctggtggtcgcta
ggtggtcgctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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