KEGG   Opisthorchis viverrini (Southeast Asian liver fluke): T265_05843
Entry
T265_05843        CDS       T04902                                 
Name
(RefSeq) hypothetical protein
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
ovi  Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ovi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    T265_05843
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ovi03000]
    T265_05843
   03019 Messenger RNA biogenesis [BR:ovi03019]
    T265_05843
   04121 Ubiquitin system [BR:ovi04121]
    T265_05843
Enzymes [BR:ovi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     T265_05843
Transcription factors [BR:ovi03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    T265_05843
Messenger RNA biogenesis [BR:ovi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     T265_05843
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     T265_05843
Ubiquitin system [BR:ovi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    T265_05843
SSDB
Motif
Pfam: RRM_1 Torus
Other DBs
NCBI-GeneID: 20320025
NCBI-ProteinID: XP_009169228
UniProt: A0A075AES3
Position
Unknown
AA seq 1203 aa
MFRRVVQPNLIFVVGLPAWICKDKEVLKGSEYFGRYGKVFKVEINQNQTFGGPQNEAIEQ
DLTISRTNAAGHYSRAPASLEFQTRHDHVGATGIHPAFSIASGSQYGSGTSVLLADVMLC
ADRRLFLCSTNFRNSRSHLATWCPPTTGRPQTQIDHTDISYRWRGSITDCRSFWNTVVDS
DHALVRIRFSLRFPGPRKVRTNRMATERLADPDVRRTYKNRLLESLPSAPPSDVNTYWDE
IATSLHSAGNFACGTTQPGALKHWISDGTVSLLKSRRNISAGPEHNRVRRVIRRQVKVSL
QELVFLVVHGLQSIFSTCGMACIVMTPSISLMLTSQGQPTFSAYITFCRSEDAMRSIKEL
DQGMLHGRPLRVSLGTTKYCSQFLRGTKCTKHECMYLHELGDPAASFTKEEMQAGKHTEY
MNKLLKEYTVSAQQQSISSVPSQLAGPAIDSAETSTVITTYSNCSDNVDSTTTTRESTYP
SSCRTRSGGTADRPAGSPPPSKAVGHNGLHCKLVNGPDTSSVLPLSDGRRLRQCRTDRPY
SEFSPDGNVVWNRHTSTSDYPSDDGKQLPHSSTHSYTNGLTSSDRDKFSTRGQHKSSGDG
RRAPTYYHRNEHRQAVPNRKQHPTEHLHNTNKNSNCATTNSPIGDWNRSQPAVIDSTGGR
LVNFGDDAVDIDFDPFRESQQGLAELLAAEVNRLVVTDEAGSHGTFNVNGHLPVQGRSAS
ASTNPLRPFAPNESGVAPDFAASTQLKQSVAPWFTNFAPPDMQGLQTMGYKHPTTLSSTV
FNSCVFPPPGFEGSAPGGVHQSGDPSSPMFSTSTSNLLDFGVGESPRSPVVSFNMGYDNT
NLACANGPLTEDSPTFSYSATLPNSTNRLDTAHFDLDVNSKTLNGPDNSNTTPLPNGPSA
MFRPYSNSTDSNPLFRSDLMRLDPQQFLSHLLATTFHAASGILNNTRLPPGTEKSSVTTS
KTTPSFDLTAFVNYLCRLSPLFSSSMNPQLSPDLANGSATNRLPSSANFPEGLLDSSAVL
SAAASILFPAAAAVQLQSKSNEFLSSGPPPLRQNDATGLSNHGFPPGLSKQAPFLQPNAS
SEKGALSLPYASGLRASSELSISDSLTWQLDDPAIVSSQLNPSASASQNQTDANWKPVFG
SVSPVDLLQQIWRSGSNAPPFDGHVASYSHYAAQTNSPNNVATSSNQRQTIRDSSLHSAS
QTD
NT seq 3612 nt   +upstreamnt  +downstreamnt
atgtttcgaagggtggtgcaaccgaacctgatatttgttgttggccttccggcgtggatc
tgtaaagacaaggaagtactgaagggttcagaatactttgggcggtatggaaaggttttc
aaggtggaaattaaccaaaatcagacgtttggtggcccacagaacgaggctattgaacaa
gatctgacgatttcccgaactaacgctgcaggtcattactcacgagcgccagcgtctctt
gaatttcaaacacgacacgaccatgttggagcgaccggtatccatcctgctttcagtatt
gccagcggcagccagtacggcagcgggacatcggtgttattagctgatgtcatgctgtgt
gctgatcgcaggctgtttttatgcagtacgaacttccgaaatagccgaagtcatctggcc
acttggtgtcctccaacaacaggccggccacaaactcaaatcgaccacactgacatcagt
taccgatggcgcggatccattactgactgccggtcgttttggaacacagttgtggactct
gaccacgcgctcgtccggattcgcttctccctacgtttcccggggccgcgtaaggtgcgg
acaaatcgcatggcaactgaaagactggcagatccggatgtcagacgaacttacaagaat
cgtcttctagagtctcttccaagtgctccaccatcagatgtgaacacatactgggacgag
attgctacctctttgcatagtgctgggaattttgcctgtggcacgacccaaccaggcgca
ctcaagcactggatatcagacggaacggtgtcactacttaaatctcgaagaaatatctca
gccggtcccgaacataaccgggtgcgaagagttattagacgtcaagtgaaagtgagcttg
caggaacttgtgttccttgtcgtccatgggcttcagagcattttttccacttgtggaatg
gcatgcattgttatgaccccttccatatctcttatgcttacttcacagggtcagccaacc
ttcagtgcctatatcaccttctgtcgatccgaagatgctatgcggtccatcaaagagcta
gatcaaggtatgcttcatgggagaccacttcgggtttcgcttgggactacgaagtattgc
agccagtttctccgggggaccaaatgcaccaagcacgaatgcatgtatcttcacgagctt
ggagatcctgcggccagttttaccaaagaagagatgcaggctggcaagcatactgaatat
atgaacaagctgttgaaagagtataccgtttctgcccaacaacagtcaatctcttccgtg
cccagtcagcttgccggcccagccatagattctgcagaaacaagcacagtcatcaccacc
tactccaattgttcggataacgtcgattccacaacaactacacgagaatccacctatcct
tccagttgtcgtacacgctccggtggcacagcagaccgtccagctggatcccctccgcca
tcgaaagcggttggacataatggactccactgcaaactagtgaatggtccggatacttct
tcagttttgccgttgagtgatggtcggcgtctaaggcaatgtcggactgatcgtccttac
tcagaattttcccctgatggaaacgtcgtgtggaataggcacacttctacttcagactat
ccttcggacgacggaaagcagcttccccactcatccactcattcgtacaccaatggtttg
actagttctgatagggacaagttctcaacgaggggtcaacataagtcgtccggggatggt
cgtcgtgctcccacctattatcatcgcaatgaacatagacaagctgtgcctaaccgcaag
caacatccaaccgagcacttgcacaataccaataagaattcgaattgcgcgacgacgaat
tctcctatcggggattggaatcgttcacagccagctgtcattgattctactggaggacga
ttggtaaactttggcgacgacgctgtagatattgacttcgatcccttccgcgaatctcaa
caagggctggccgaactccttgcagcggaagtcaatcggttagtagtgacggatgaagca
ggttcacatggaacctttaatgtgaatggccacttacctgttcaaggacgtagtgcgtct
gcgtccaccaatccgctcaggccctttgcacccaacgaaagtggtgtagcaccggatttt
gccgcctccactcagctgaagcagtctgtcgctccttggttcactaattttgcccctccg
gatatgcaaggacttcagacaatgggctataagcacccaacaactctctcttcaacggtg
tttaactcatgtgttttcccgccccctggatttgagggcagtgctcctgggggagtgcac
cagtcgggggatccctcatcgcccatgttttctacgtcaacatctaatctgctcgatttt
ggggttggtgaatcaccccgttctcctgtagtctccttcaatatgggttatgataacact
aacctggcatgtgcaaatggaccacttacggaagactctcctactttctcttattcagct
actttgcctaattcaaccaatcgattggatacggctcactttgatctagatgtcaactcc
aaaaccctcaatgggccagataacagcaatacaactcccctaccaaatggtcctagtgca
atgttccgtccttactccaattctacggatagcaatcccctgtttcgatcagacttgatg
cggctcgacccacaacaattcttatctcatttgcttgccaccactttccatgcagcatcg
ggtatactcaacaatacgcggctgccaccgggtactgagaaatcctcggtgacgacgtcc
aagaccaccccctcatttgacctcactgcgtttgtcaattacttatgtcgactgtctccc
ctattctcctcctcaatgaatccccagttgtccccggacttggcaaatgggagcgcaact
aaccggctgccgtcgtccgctaacttcccagagggacttctggattcttccgctgtacta
tcagcagctgcttcaattctgttcccagcagctgcggctgtacaactgcagtccaagtca
aatgagttcttatctagtggaccaccaccactcagacaaaatgacgccaccggattgtct
aatcacgggtttcctcccggactgtctaagcaggctcctttccttcaacccaacgcatcc
tcggagaagggagcactctccttaccgtatgctagtggcttgagggcgtcctccgaactc
tcgatttcagattctctgacttggcagcttgacgaccctgctattgtctccagtcagctc
aatccctctgcatcagccagtcagaaccaaacagatgccaactggaagcctgtcttcggt
tcagtctcgccagttgatctccttcagcagatttggcgatccggctcaaacgcaccaccc
tttgatggacacgttgcgtcctatagtcattatgcagcacagacaaacagccccaacaac
gtcgctaccagttccaatcagcgacaaactatcagagattcttctctacattctgcgtct
cagacagactag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (48)   

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