KEGG P.abyssi: PAB0423

Pyrococcus abyssi: PAB0423

Entry

PAB0423 CDS P.abyssi

Gene name rpoB

Definition DNA-directed RNA polymerase subunit B (EC:2.7.7.6)

Orthology K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6]
K03045 DNA-directed RNA polymerase subunit B" [EC:2.7.7.6]

Pathway pab00230 Purine metabolism
pab00240 Pyrimidine metabolism
pab01100 Metabolic pathways
pab03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:pab00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:pab00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:pab03020]

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7
RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 Auto_anti-p27 IBR
TF_Zn_Ribbon zf-FPG_IleRS Transposase_35
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 14520830
NCBI-GeneID: 1495519
IGM_Orsay: PAB0423
UniProt: Q9V115

Position 579538..582891

AA seq 1117 aa
MRGPTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDF
EVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRI
GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK
DERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDI
VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL
PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF
SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV
SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL
ALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIK
KDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK
WSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAA
PRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFV
VAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGY
RGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPS
ERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTES
GIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF
KHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR
EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVC
GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV

NT seq 3354 nt +upstreamnt +downstreamnt
atgagaggtccgaccgttgtagaggttactcccgacgatctttggattgttatggagagc
tactggcaagaaaagggtctcgtaagacagcacttggattcttacaatgccttcattgat
aggggccttcaagaggtcgttgatgaattcggaggaataaagccggatattcctgatttt
gaagttaagtttgggaaaataagggttggagaaccagaattccaggagcctcatggtcaa
aggaagccactgtacccaatggatgcaaggattaggaacctaacttactccgcacctctc
tacctggaaatgatacccgtgattaggggaatagaacaggaacccgttgaggtgagaata
ggggagctcccaataatgctcaagtcgaaagtttgcagactctatggacttagcgatgac
gagttaaggcaactcggtgaggatccaaaggatcctggaggttactttataattaatggt
tctgagagagtaatagtttctatagaggatatagcccctaatagaaccctagtagaaaaa
gatgagaggcaggagaagtacatcgccaaggtcttctcttataggcatggttatagggct
ctcgttacagttgagagaaagaaggatggaattctatacgttggtatacccaacgttcca
aagccggtaaagttcgtttatgtgatgagagctttaggtctggagagggataaggacata
gtggatgccgttggtaatgatcctgaggttcagcagattctattcgacaaccttgaggat
gcaagtgatatcactacccagcaggaggccctagagtacataggaaagctagtggctcct
ggccaagctagggagtacaggttgaagagggcggaatacgttatagacaacaatctcctc
ccacacataggtgtttcccctgaggataggataaggaaggcctactaccttggaatgatg
gcattaaaggtcatagagctatccctgggtaagagagatgaagacgataaagatcactac
gctaacaagaggctgaggcttgcgggggatctgctaaaggaccttttcagggtagcgttt
agtcagcttgtaaaggacatacagtaccagatgacaaagacctaccagaggaggggtgag
aagtacgtatttgggaacatccacaggttcataaggaactcgataagacccgacgttctt
accgagaggattgagcatgctctagcaactggagcatggccgggtggaagaactggtgtg
agccagttgctcgatagaactaattacgtctcaacgctctcccacctgagaagggttaca
tctcctcttgacagagagcaaccccacttcgaggcaagagacttgcacggaactcactgg
ggaaggatatgtccaactgaaacccctgaaggtcctaactgtggtctagttaagaactta
gcattaatggcccagataaccaccgcagttcccgaggaagaggtaaaggaatacctaatg
tccctgggcatagttccaattgaggttagaaggccgagtccagagctctggagagtgtac
ctcaatggagttataataggaaccattgaggatggcaaggcccttgttgagaggattaag
aaggacaggaggagcggaaagataagcgacataataaacgtcgcctattacgaggacgtt
agggaggtttacgttaatagcgatgatggtagagttaggaggccactaataatagtcgag
aacggtaagccaaagctaactaaggagcacgttcaggcaattaaagagggaagactcaag
tggagcgacctcgttaggatgggcgtaatcgagtacctcgatgctgaagaggaggagaac
gcgtacgttgcgatgtggccctgggaggtcaccgaggaacacactcatctcgagcttatg
cccgcagcaattctaggattgccggcttcactaattccatacccagagcacaacgccgcc
ccgagaaatacatatggagccggtatggccaagcagagtttgggtcttggatgggctaac
ttcaggattagggtcgacacgaggggtcacttgttacactatccacagattccactcgtt
aactctagaataatgaaggccgttggttacgaggacaggcctgcgggtcagaacttcgtc
gtcgctgtcttggcttatcacggctataacatggaggatgctattataatcaataaggca
tctatagagagaggattagctagatcaacgttcttcagaacgtacgaggctgaggagaag
aagtacctaggaggtcaaaccgataagttcgagattccatcacctaccgttaggggatac
aggggagagaagtactacaggcacctcgatgaagatggtttgatattcccagagtcaaag
gttgaaggaaaggacgttctgataggcagaacatcaccgccaaggttccttgaggagaga
gggttaggagctgttagtttacaagagagaagggaaacgagtgttgccgttaggcccagt
gagaggggtgtagtcgataaggtgataataactgaaactggagatggaactaagctggtc
aaggtcacggttagagacttaaggatcccagagattggagataaattcgcttcaaggcac
ggtcagaagggtgtcataggattgatagtgccccaagaagacatgccttggaccgagagc
ggaatagttcccgacctaatagttaacccacacggtatcccatcgagaatgaccgttgga
cagttacttgaggctattggaggtaaggtagccgctttaaagggaaggagggttgatggt
acagcgttcataggggagcccgaggagaagctcaggaaagagttagaagagcttggcttc
aagcacaccggaagggagataatgtacgatggaattactggaaagaggttcgaagctgac
atattcgtcggagtaatctactaccagaggctgcaccacatggttgccgataagatacat
gcaagaagcaggggtccagttcaggttctcaccaagcaaccaaccgagggtagagctagg
gaaggaggtctcagattcggagagatggagagagatgtcctcgttggtcatggtgctgca
atgctactaatcgagcgtcttctggaggagagtgataagactgaagtctgggtctgtgag
aactgtggtcacatagccttggaggacaagagaagacataaggtctattgtccagtctgt
ggagaggaggagaggattagtaaagttgagatgagttatgcgtttaagctactcttggat
gagcttaaggccatggttattaggccaaagttaaacctcacggagagggtgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (2)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   IGM_ORSAY-PAB (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (12)   
   PROSITE (1)   
All databases (29)

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