KEGG P.abyssi: PAB0424

Pyrococcus abyssi: PAB0424

Entry

PAB0424 CDS P.abyssi

Gene name rpoA1

Definition DNA-directed RNA polymerase subunit A' (EC:2.7.7.6)

Orthology K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]

Pathway pab00230 Purine metabolism
pab00240 Pyrimidine metabolism
pab01100 Metabolic pathways
pab03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:pab00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:pab00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:pab03020]

SSDB

Motif Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
RNA_pol_Rpb1_4 GFA

Other DBs NCBI-GI: 14520831
NCBI-GeneID: 1495520
IGM_Orsay: PAB0424
UniProt: Q9V114

Position 582895..585618

AA seq 907 aa
MQSVKKVIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRC
ETCGAKAGECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKKL
ELAKNRRSEVNKILKEIHKKARERMVCPHCGAPQYPIKFEKPTIYWELRKDEQGNEYKHR
MMPTEIRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTARPSITLETGIRAEDD
LTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRP
LKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPIQIAMELTVPEKVT
EFNIEKLRKMVLNGPDKYPGANYVIDPEGRRIRIMESNRENLARMIDIGWTVERHLLDGD
IVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAE
ARILMEVQNHIISPRYGGPIIGGIQDHISGGYLLTREGAYFTREEVEQMLMFAGVDIKEL
PEPDKYENGKPLWSGKTIFSLLLPDDLTVWYRNKLCDEPERCEALEKLIEEKLMPDPEEV
RKLAYDGFVYIQNGKLLSGAIDKKAYGREDGIILDLIVREYGVERARQFLDQVTKLTIWV
ITHKGFTTGIDDEDLPEEARDRIKEIIREAEERVQKLIEAYKRGELEPLPGKTLEETLES
KIMAVLAEARDNAGSIAEKYLGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLY
RGFRGRVLSHFKPGDLGARAKGFVVNSYKSGLSPQEYFFHAMGGREGLVDTAVRTAQSGY
MQRRLINALQDLKVDYDGTVRDPTGVIVQFRYGEDGVDPMKSWGGKTVDVDRVIMRTLIK
MRANNKG

NT seq 2724 nt +upstreamnt +downstreamnt
atgcaatccgttaagaaggttatcggtagtatagagtttggaattctctcccctcaagaa
attagaaagatgagtgcagtcgaagtcacggttccagacacttacgacgatgacggttac
ccaatcgaaggtggcgtaatggataaaagaatgggtgtcattgacccaggattaagatgt
gaaacctgcggtgccaaagctggtgaatgtcctggccacttcggccacatagaactggct
aggccggtaattcacgttggattcgccaaaactattcacagaatcttagagagcacctgc
cgtgagtgtggtagaattaagctaaccgatgaagagattgaggagtacatgaagaagcta
gagttggccaagaacaggagaagcgaggttaacaagatactcaaggagattcacaagaaa
gcgagagagagaatggtttgcccccactgcggtgctccccagtatccaattaagttcgaa
aagcccacaatctactgggagctcaggaaggatgagcagggtaacgagtacaagcatagg
atgatgccaactgaaattagagataggcttgaaaagattccagacaaggatcttccgctt
ctcggacttcaccccgagaagtcgaggcccgaatggatggttcttaccgtccttccagtt
cctccagttactgctagaccctcaataactcttgaaactggaattagggctgaggatgat
cttactcataagttagttgacataataaggatcaataacaggctcaagcaaaacatagag
gctggagctccccagctcattatagaggatctttgggacctccttcagtaccacgtgaca
acttacatcaacaacgaaacctctggagttccgccggcaaagcacaagagtggaagacca
cttaaaacgttggctcaacgtctgaagggtaaggagggaagatttagaggaaacctaagt
ggtaagcgtgtaaacttctcggctagaaccgtaattagcccagatccaatgataagcatc
aacgaagttggagttccaatccagatagctatggagcttacggttcccgaaaaggtcacc
gagttcaacatagagaagctcaggaagatggttctcaatggtcccgataagtatcctggg
gctaactacgttatagaccctgaaggtaggagaattaggataatggagagcaacagggag
aacttggctaggatgatagacatcggttggacggtggagaggcacctactcgatggggac
atagttctgttcaacaggcagccctcacttcacaggatgtcaattatggcccacagggtt
agggtaatgccctacagaaccttccgccttaacctagcagtatgtccgccttacaacgcg
gactttgatggagacgagatgaacctccacgttccacaaaccgaggaagctcaagctgag
gcgagaattctcatggaggtgcaaaatcacataatatctccaaggtacggtggtccgata
ataggtgggatccaggatcatatctcgggcggttacctactaaccagggagggagcctac
tttacgagggaagaggtcgagcaaatgctaatgtttgcaggcgttgatattaaggagctt
ccagagccagataagtacgagaacggaaagcccctgtggagtgggaagacaatattctca
cttctcctgccggatgaccttacggtatggtacaggaacaagctttgtgacgaacccgag
agatgtgaggccttggagaagctcatagaagagaagctaatgccagaccctgaggaagtt
aggaagttggcttacgatggcttcgtttacatccagaatggaaaactgcttagcggtgcc
atagataagaaggcctacggtagagaggatggaataatcctagacttgatagttagggag
tatggcgtcgagagggcgaggcagttcctcgatcaggtaaccaagcttaccatatgggtt
ataactcacaagggcttcacaacaggaatagacgacgaggatctgccagaggaagctagg
gatagaattaaggagattataagggaggccgaggagagagttcaaaagctgattgaagct
tacaagagaggagaactcgagcccttgccaggtaagaccctggaggaaaccctcgagagc
aagatcatggcagttcttgccgaggctagagataacgcgggttcaatagctgagaagtac
ctcggtatggataaccacaccgtaataatggccaagacaggagctagaggtaagatactc
aacataacccagatggccgctttacttggtcagcagtcgattagaggtaagagactttac
agaggattcagaggtagagttctaagccacttcaagcctggagatctgggagctagggcc
aaaggtttcgtcgtaaactcctacaagagcggtctaagtccccaggagtacttcttccac
gcaatgggtggaagggaaggtcttgtagataccgcagttagaacagctcagagcggttac
atgcagagaaggctaatcaacgccctacaggatctcaaggtggactacgatggaacggtg
agggatccaacaggtgtaatagtccagttccgctacggtgaagatggagttgatccaatg
aagagctggggtggaaagaccgtcgatgtagatagggttattatgaggaccctgattaag
atgagggcgaacaacaaggggtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   IGM_ORSAY-PAB (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)

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