KEGG   Pyrococcus abyssi: PAB0950
Entry
PAB0950           CDS       T00024                                 
Name
(GenBank) Probable archaeal transcription factor, related to transcription factor TFIIE, alpha subunit
  KO
K03136  transcription initiation factor TFIIE subunit alpha
Organism
pab  Pyrococcus abyssi
Pathway
pab03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PAB0950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pab03021]
    PAB0950
Transcription machinery [BR:pab03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIE
     PAB0950
 Prokaryotic type
  Archaeal type
    TFE
     PAB0950
SSDB
Motif
Pfam: TFIIE_alpha HTH_9 Rad50_zn_hook HTH_5 HTH_24 HTH_Crp_2 Sigma70_r3 TrmB HTH_AsnC-type HTH_DeoR Phage_rep_org_N
Other DBs
NCBI-ProteinID: CAB50336
UniProt: Q9UYS6
Position
1386592..1387164
AA seq 190 aa
MSRKNKALLEIAKDIGGDEAVEIVKALEKKGEATDEELAEITGIRVNTVRKILYALYDEK
LADFKRIKDEETGWYYYYWHLETKRLPEIIRARKLRELERLKKMLQEETSEVYYHCGNPE
HPKLTFDEAFEYGFTCPICGEILQEYDNSAVIEELKKRIEELEIELGLRPSPKKEKKKTR
AKAKRKTRKK
NT seq 573 nt   +upstreamnt  +downstreamnt
atgtcaaggaaaaacaaggccttgcttgagatagccaaggacattggtggagatgaggcc
gtagagatagtcaaagccctagaaaagaaaggagaagcaacggacgaagagttagctgag
ataactggaataagggtaaacacggttagaaaaattctgtacgctttatacgatgaaaag
ttggcagattttaagagaataaaggatgaagaaacaggatggtattactattactggcat
ttagaaacgaagagactacctgaaataataagggcccgaaagcttagggaattagagagg
ctaaagaagatgctccaagaggaaactagtgaggtttactatcactgtggcaaccctgag
catccaaagttaacgtttgatgaagcgtttgaatacgggttcacttgcccaatctgcggt
gaaatacttcaagaatacgacaactcagctgtaatcgaggaactcaagaagaggattgag
gaacttgagatagagcttggactaagaccctcgcctaaaaaggaaaagaagaagacgaga
gctaaagctaaaaggaaaactagaaaaaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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