KEGG P.abyssi: PAB2404

Pyrococcus abyssi: PAB2404

Entry

PAB2404 CDS P.abyssi

Definition DNA polymerase II large subunit (EC:2.7.7.7)

Orthology K02322 DNA polymerase II large subunit [EC:2.7.7.7]

Pathway pab00230 Purine metabolism
pab00240 Pyrimidine metabolism
pab01100 Metabolic pathways

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:pab00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:pab00240]
Genetic Information Processing; Replication and Repair; DNA
replication proteins

SSDB

Motif Pfam: PolC_DP2 DUF1407 Terminase_GpA SprT-like
PROSITE: INTEIN_N_TER INTEIN_C_TER NLS_BP PUA

Other DBs NCBI-GI: 14520338
NCBI-GeneID: 1495007
IGM_Orsay: PAB2404
UniProt: Q9V2F4

Position complement(115176..119543)

AA seq 1455 aa
MELPKEMEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGV
AKRIRELVKEYGKEIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIE
GIANVKIKRNTWADNSEYLALYYAGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKH
IERMVEEVDLYHRAVTRLQYHPSPEEVRLAMRNIPIEITGEATDDVEVSHRDVPGVETNQ
LRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKEKGEPKEEGKEESLAEST
LEETKVEVDMGFYYSLYQKFKEEIAPSDKYAKEVIGGRPLFSDPSKPGGFRLRYGRSRAS
GFATWGINPATMILVDEFLAIGTQLKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDY
NLALKVREDVEEILYLGDAVIAFGDFVENNQTLLPANYCEEWWILEFVKALKEIYEVHLE
PFTENEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHFSEVLGIPLHPYYTLYW
NSVEPKDVEKLWRLLKNYAEIEWSNFRGIKFAKKIVISQEKLGDSKRTLELLGLPHTVRD
GNVIVDYPWAAALLTPLGNLNWEFMAKPLYATIDIINENNEIKLRDRGISWIGARMGRPE
KAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIAFFKCPKCGHVGPEHLCPN
CGTRKELLWVCPRCNAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSELLNRAMENVKV
YGVDKLKGVMGMTSGWKMPEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFRPREIGV
SVEKLRELGYTHDFEGKPLVSEDQIVELKPQDIILSKEAGRYLLKVAKFVDDLLEKFYGL
PRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAHPYFHAAKRRNCFPGDT
RILVQIDGVPQKITLRELYELFEDERYENMVYVRKKPKREIKVYSIDLETGKVVLTDIED
VIKAPATDHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVSELELVE
QSSSSQDNPKNENLGSPEHDQLLEIKNIKYVRANDDFVFSLNAKKYHNVIINENIVTHQC
DGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPREVDSEVHNMDIVRYYPL
EFYEATYELKSPKELVGVIERVEDRLGKPEMYYGLKFTHDTDDIALGPKMSLYKQLGDME
EKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPPL
NGKCPVCGGKIVLTVSKGAIEKYLGTAKMLVTEYNVKNYTRQRICLTERDIDSLFENVFP
ETQLTLIVNPNDICQRLVMARTGEVNKSGLLENLSNGSKKTEKAEKAEKPRKKSDEKPKK
KRVISLEEFFSRKSK

NT seq 4368 nt +upstreamnt +downstreamnt
atggagcttccaaaggaaatggaagagtatttcgaaatgctacagagggagatagataag
gcctatgagatagctaaaaaggcgagggctcagggtaaggatcccagcttggatgttgag
atacctcaagctaccgatatggccggaagagttgaaagcttagttggccccccaggagtt
gctaaaaggattagggagttagttaaagagtatggaaaggagattgccgccctcaaaata
gttgacgagataattgaaggtaaattcggcgaccttggaagtagggagaagtacgctgag
caggccgtgagaactgcattggcaattctaaccgagggaatagtttccgctccgattgag
ggtatagctaacgtcaagataaagagaaacacttgggctgacaactccgagtatctggcc
ctctactatgcgggcccaataaggagctcaggtggaaccgctcaggcccttagcgttttg
gttggtgattacgttagaaggaagctcggcctagacaggtttaagccaagcgagaagcac
atagagagaatggttgaagaggtagatctttatcatagggccgtcactaggttgcagtat
catccctctccagaggaagttaggcttgctatgaggaacattccaatcgagataacaggt
gaggcaacggatgatgttgaagtctcccatagggacgttcctggggtcgaaactaatcag
cttagaggcggtgcaattctagttctagctgaaggtgtcctccaaaaggctaagaagctt
gttaaatatatagacaagatggggattgagggttgggaatggctcaaggaattcgttgag
gctaaggagaagggagaacctaaggaggaaggtaaagaggaaagcctagctgaatcaacc
cttgaggaaacgaaggtcgaagttgatatgggcttctactactctctttatcagaagttc
aaggaggaaattgctccaagcgacaagtacgctaaggaagttatagggggcagaccttta
ttctctgatccatctaaaccaggtggatttaggttgcgttacgggaggagtagggctagc
gggttcgcaacttggggaataaaccctgcaaccatgattttagttgacgagttcttggca
ataggaactcagctaaaaaccgaaaggccagggaagggtgcggtggttactccagtaacg
acgattgagggcccaatagtcaagctcaaggatggtagcgttctgagggttgatgattat
aatttggccctcaaggttagggaagatgttgaggagatactttaccttggtgacgcggtg
atagctttcggagatttcgttgagaacaaccaaaccctccttccagctaattattgcgag
gagtggtggatacttgagttcgtcaaggccctcaaagagatatatgaggtccaccttgag
ccttttaccgaaaatgaggaagagagcattgaggaagcttctgattacctcgagattgac
ccagaatttttaaaggaaatgctcagggatccgttgagagtaaaacctccggttgagctt
gccatacacttctccgaggttcttggaatacccttgcatccctattacaccttgtactgg
aattccgtcgagcccaaagacgttgaaaagctgtggagattgctcaaaaattatgccgag
attgaatggagcaactttaggggaattaaatttgcgaagaaaattgtcatatcccaagaa
aagcttggagattctaagaggactttagagctcctgggattgcctcacaccgttagagat
gggaacgttatagtggactatccctgggctgccgccctcttaactcccctcggcaacttg
aattgggagttcatggcaaagcccctttacgccaccatagatataatcaacgagaataac
gagataaagcttcgtgataggggaataagctggattggcgcgagaatgggtaggccagag
aaggcgaaagagagaaagatgaagcctcctgttcaagttctgttcccaataggtctggcc
ggcgggagcagtagagacataaagaaagccgctgaagagggtaaagtggccgaggttgag
atagctttcttcaagtgccccaagtgcggtcacgttggcccagagcatttatgtccaaac
tgtggaacgaggaaagaacttctctgggtctgtccaaggtgtaacgcggagtaccctgag
agccaggccgagggctataattacacttgtccaaagtgcaacgtcaagctaaggccctac
gccaagaggaagataaggccttccgaattgctgaatagggccatggagaacgtcaaagtc
tacggagttgacaagttaaagggagtcatgggaatgacttctggctggaagatgccagag
ccacttgagaaaggtcttctgagggctaaaaacgatgtttacgtgttcaaggatggaacg
ataaggtttgacgcaacagatgccccaataacccacttcaggccgagggaaattggagtt
tccgttgagaagttaagggaacttggttatactcatgacttcgagggtaaacccctggtt
agcgaggatcaaatagttgagctcaagccccaggatattatcctatcaaaggaagccggg
agatatctcctaaaggtggccaagtttgttgatgacctccttgagaaattctacggcttg
ccgagattttacaacgccgaaaagatggaagatttaataggccatctcgtcataggcttg
gctccacacacctccgctggtatagtgggtaggataataggctttgtcgatgccctagtt
ggttacgctcacccctacttccacgctgcgaagaggagaaactgcttcccgggtgatact
aggattctcgtccaaatagatggagttccacagaagataactctaagggagctgtatgag
ctgttcgaggatgaaaggtacgaaaatatggtttacgttaggaagaagcccaagagggaa
attaaggtttattccattgacctcgaaactggcaaagttgtattgacggatatagaggat
gtcataaaggctccggccacggatcatttgataaggttcgagcttgaagatggaagaagt
tttgaaaccaccgtagatcatccagttttagtttatgaaaacggcagatttattgagaaa
agggcctttgaagttaaggagggggataaagtactcgtctctgagctcgagttagttgaa
caatcaagctcgtcccaggataaccccaagaacgagaacttaggatcccctgagcatgac
caactcttagagatcaagaatatcaaatacgttagagctaatgatgactttgtgttctct
cttaatgctaagaaataccataacgttataataaatgagaatattgtaacgcatcaatgt
gatggagatgaagacgctgttatgctcctcctagatgccctcctaaacttctctcgctat
taccttccggaaaagcgtggtggaaagatggacgctcctttggtaattacaacgaggctt
gatcccagggaagttgatagcgaagtccataacatggacatagtcaggtattatcccctg
gagttctacgaggcaacttatgagcttaaatccccgaaggaactcgttggggtaatagaa
agggttgaggatcgcctaggaaagcctgagatgtactatggcctgaagttcacccacgat
acggatgacatagctttgggtccaaagatgagtctatacaagcagttaggggacatggaa
gagaaggtcaggagacagcttgaagttgctaagaggattagagctgtggatgaacatgga
gttgccgagaagatattgaattcccacctaattcctgacttaaggggtaatctaaggagc
tttacgaggcaagagttcaggtgcgtcaagtgcaacactaagttcaggaggcccccactg
aatggaaagtgccccgtttgcggaggtaaaatagtccttaccgtgagcaagggggcaatc
gagaaatacttgggaactgccaagatgctcgttaccgaatacaacgtgaagaattacacg
aggcagaggatatgcttgactgaaagggacatagattcactgttcgaaaacgtgttccca
gagacccagttaactttaatcgttaatccaaatgatatctgccagagactcgtgatggcg
agaactggagaagttaataagtcaggcctccttgaaaatctttctaacggttcgaagaag
actgagaaagctgaaaaggccgagaagcccaggaagaaatcagatgagaagccaaagaag
aaaagggttatcagcctcgaagagttcttttcaagaaaatcaaagtaa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   IGM_ORSAY-PAB (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (4)   
   PROSITE (4)   
All databases (22)

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