KEGG   Pediococcus acidilactici: A4V11_01365
Entry
A4V11_01365       CDS       T04512                                 
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase III
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
paci  Pediococcus acidilactici
Pathway
paci03030  DNA replication
paci03430  Mismatch repair
paci03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:paci00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A4V11_01365 (polC)
   03430 Mismatch repair
    A4V11_01365 (polC)
   03440 Homologous recombination
    A4V11_01365 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:paci03032]
    A4V11_01365 (polC)
   03400 DNA repair and recombination proteins [BR:paci03400]
    A4V11_01365 (polC)
Enzymes [BR:paci01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     A4V11_01365 (polC)
DNA replication proteins [BR:paci03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     A4V11_01365 (polC)
DNA repair and recombination proteins [BR:paci03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     A4V11_01365 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_a_NII DNA_pol3_finger DNA_pol3_a_NI tRNA_anti-codon HHH_6 DNA_pol_A_exo1 HHH_3 DEDDh_C T2SSK YhfH
Other DBs
NCBI-ProteinID: AOW73735
Position
279753..284063
AA seq 1436 aa
MSLSENEQFKILLKQIDWSAPPAVGEGLIKNLTVHANSKRWFFNFEWDDILPYDQFAEFD
ERLKHTFKPIANVDYQITTRANTITKEQVAGYWDWIIKHSGIQSSLLQVLCDKAVPDFQD
QVLTVKVDNEISQNLLSEEALRTIGQKYQQAGFPQFKIQVAIDNDGAEQRLAQYHEEKIK
RDKEIVQKATEAIKKAEKKKATEKKAAPQFNGKVQIGKPISDQEQVTQLRDINQEERSVT
IEGYIFDVEVKTLRSERQLLIFKVTDYTSSITIKKFSRNESDEQLFAAVKQGLWVRVRGS
VQEDSFMKDLTMNAYDVTQISHAEREDTADEKRVELHLHTNMSTMDATNSISDFVSQAAK
WGHPAIAVTDHAGLQAFPEAYAAGKKSGVKPLFGVEANLVDDGVPIAYNSAHRALKGGKY
VIFDVETTGLSAIYDKVIELSAVKMENGNVIDEFEEFIDPGFPLSETTINLTSITNEMVR
GSLSEKEVFTKFREFYEDAIIVGHNVTFDIGFMNTGYLRHGMEEIKNPIIDTLTLARFLY
PTLKGYRLNTLAKKFNVVLEHHHRAIYDAETTGHLCYLFLKDAEERYGIEYHDQLNDHMT
ENDAYKHARPNHAVLIAKTQAGLKNLFKLVSLSNVKYFYRVPRIPRSELERLREGIIVGS
ACSSGEVFTAMAQKGYVEARDRAKFYDYLEVMPKPVYQPLIDQEIVSDTNKLEEIIGNIV
KLGKDLDIPVVATGDVHYLNPQDAIYRKILINSQGGANPLNRTELPDVHFRTTDEMLEAF
RFLGEETAHQIVVENPNQIADSIDDISPVKDKLYTPKMPGAEDRIKQLAMDQAHALYGKE
LPEIVSERLDKELTSIIGNGFSVIYLIAQRLVHKSNKDGYLVGSRGSVGSSFVATMSGIT
EVNPLPPHYRCPNCQYSHFYTKGEYGSGYDLPDKKCPECGTLMIGDGQDIPFETFLGFKG
DKVPDIDLNFSGDYQPIAHNYMQVLFGKNNVFRAGTIGTVADKTAYGYVKAYERDTNQHL
RGAEIERLAKGATGVKRTTGQHPAGILIVPDYMDIYDFSPIQYPADDQTAAWETTHFDFH
SIHDNILKMDILGHDDPTMIRKLQDLSGIDPQTIPTDDPGVMKIFSGPEVLGVTEEQIKS
KTGTLGIPEFGTRFVRGMLEETHPTTYSELLQISGLSHGTDVWLGNAEELIKAGTITLKD
VIGCRDNIMMDLIHYGLDSQSSFKIMESVRKGKGIPEGYEEKMRAANVPDWYIESCGKIK
YMFPRAHASAYVLMALRIAYFKVYYPLVYYAAYFTVRADDFDIVAMSRGKESLKNRMQEI
NDKGNEASAKEKNLLTVLELANEMVERGFNFKMIDLEKSDAEEWLIDGDSLIAPFNALPG
LGLNVAKQIVAARADKPFLSKEDLAKRGHVSQTLIDFMTENNVLAGLPDENQLSLF
NT seq 4311 nt   +upstreamnt  +downstreamnt
ttgagtttatcagaaaatgagcaatttaaaattttgctaaaacaaatagattggtcggcc
ccgccagcggttggcgaaggactaattaagaatttaacggttcatgcaaattcgaaacgc
tggttttttaattttgagtgggacgatattctaccttatgatcagtttgcagaatttgat
gagcggttgaaacatactttcaaacccattgcaaacgtagactaccaaattaccactcgg
gcaaatacaatcactaaagaacaagtagcgggatactgggattggattattaagcatagt
ggcattcaatcctcgttattacaggtactatgtgataaggcagttcctgattttcaagac
caagtattaacggttaaggtcgataatgaaatcagccaaaatttgcttagcgaagaagcg
ttacggacaattggacagaaatatcagcaagccggctttccccaatttaaaatccaggta
gcgattgacaatgatggagccgaacaacgcttagcccaatatcacgaggaaaaaattaaa
cgtgataaggaaattgtccaaaaagcaaccgaggcaattaaaaaagcggaaaagaagaag
gctaccgagaaaaaagccgctccccaattcaacgggaaggttcaaattggtaaaccgatt
agtgaccaagagcaggttacacagttacgggatattaaccaagaggaacgttcggtaacc
atcgaggggtatatttttgatgtagaagttaaaactttgcgttcagaacggcaactttta
atttttaaagttactgactacacttcttcaattaccatcaagaagttttcacgtaatgaa
agtgatgaacaactatttgcggcagtcaaacaaggactttgggtacgtgtgcgtgggagt
gtgcaagaagatagcttcatgaaggaccttaccatgaatgcttatgatgtcacccaaatc
agtcacgcagagcgcgaagatactgctgacgaaaaacgggttgaattgcatttgcatact
aacatgagtacgatggacgctactaatagtattagcgactttgttagccaggctgctaaa
tgggggcatccggccattgccgttaccgatcatgctgggttacaagcctttcctgaagca
tatgccgctggtaagaaaagcggggttaaaccgctttttggtgtggaagctaacctagta
gatgatggggtaccgattgcttataacagtgcacaccgcgcacttaaaggcggtaaatac
gtcatctttgacgtggaaacgactggtttgtctgcgatttatgacaaggtaatcgaactt
tctgcggttaaaatggaaaatggtaacgtaattgatgaattcgaagagttcattgatcca
ggatttccgttatctgaaaccaccattaacttaaccagcattactaacgaaatggtccgg
ggttcactttcggaaaaggaagtttttaccaaattccgggaattttatgaagacgcgatt
attgttgggcacaacgttaccttcgatattggttttatgaataccggctatctacggcac
gggatggaagagattaaaaatccaattattgatacgttaaccttagctcgtttcctatac
ccaaccttaaaagggtaccggttaaatacgttggctaaaaagtttaacgtagttctagaa
catcatcaccgggccatctacgatgcggaaacgactggacacctttgctatttgttctta
aaagatgctgaagagcgttatggaattgaatatcatgatcaactaaatgatcacatgacg
gaaaacgacgcgtataaacatgctcggccgaatcacgcagttttgattgccaaaacgcaa
gctgggttgaagaatctatttaaattagtttcgttgtcaaacgttaagtacttctatcgg
gtgccacgaattccgcgttcagagttagaacgattacgggaaggcatcattgtgggctct
gcttgctcaagcggtgaggttttcaccgcgatggcacaaaagggttacgttgaagcacgg
gatcgggctaagttttatgattatttggaagtaatgcctaagccagtttaccaaccgtta
attgaccaagaaatcgttagtgacactaacaaattggaagaaattatcggcaatatcgtt
aaattgggtaaagatttagatattccggtagtggctactggcgatgtgcactaccttaat
ccgcaagatgcaatttatcggaagattttgattaattctcaaggaggagctaacccgtta
aaccggaccgaattgcctgacgtgcacttccgcaccacggatgaaatgctggaagccttc
cgttttcttggggaagaaactgcccaccaaattgtggttgaaaatcctaatcaaatcgcg
gatagcattgatgacattagtccggtcaaggataagctatatacgcctaaaatgccgggt
gctgaggaccgaattaagcagttggcaatggatcaggctcatgctctttatggtaaagaa
ttgcccgaaatagttagcgagcggttagataaagaattgaccagtattatcggaaatggt
ttctcagtaatttatttaattgcccagcggttagtacacaagagtaacaaagacggatac
ttggtaggttcccgggggtcggttggttctagttttgtagctacgatgtctggaattacc
gaagttaatccgttgccgccacactaccgctgtccaaactgtcaatattctcatttctat
actaaaggggaatatggttctggatacgatttaccagataagaagtgtccagaatgcggt
actttgatgattggtgacggtcaagacattccgttcgaaactttcttaggctttaaggga
gataaggttccggatatcgatttaaacttttcaggagactaccagccaattgcgcataac
tatatgcaagttttgttcggtaagaataacgttttccgcgctggaacaattggtaccgtc
gctgataagactgcttatggctacgtgaaggcttacgaacgggacactaaccagcatttg
cgtggtgccgaaattgaacggcttgccaagggagctaccggagttaaacggacgaccgga
caacatccagcgggaattttgatcgtgcctgattatatggatatctatgatttcagtccg
atccaatacccagcggatgaccaaactgcagcctgggaaacgacccattttgatttccat
tcgattcacgataatattttaaaaatggatattttgggccatgatgatccgaccatgatc
cggaaattgcaagatttgtctggcattgatccgcaaaccattcctactgacgacccggga
gtaatgaaaatcttctccggtcccgaagtgttgggagttacagaagaacagattaaatcc
aagaccggtacgctaggaattccagaatttggtacgaggtttgttcgggggatgttagaa
gaaacccatccaaccacttattctgaactattacagatttcaggactttctcacggaacc
gacgtgtggttaggaaatgcggaagagttaattaaagcgggaaccattacgttaaaagat
gttattgggtgccgggataatatcatgatggacttgattcattatggacttgattcgcaa
tcgtcctttaagatcatggaaagtgttcggaaaggtaaggggattccagaaggttacgaa
gaaaaaatgcgtgcagctaacgttcctgattggtacattgagtcgtgcgggaagattaag
tacatgttcccgcgggcccatgcttcagcttacgtcttgatggcgttgcggattgcttac
tttaaggtttattatccgttagtttattatgcagcatactttaccgtgcgtgccgacgat
tttgatatcgtggcgatgtctcggggaaaagaatccttaaaaaaccggatgcaagaaatt
aatgacaagggtaatgaagcttcagcaaaagaaaagaatttgttgactgttttggaatta
gctaatgaaatggtcgaacgaggcttcaactttaagatgattgaccttgaaaaatcggat
gcggaagagtggttaattgatggcgactcattgattgccccatttaacgcgcttcctggt
ctgggattaaacgttgctaaacaaatcgtggcagctcgggccgacaagccgttcctttct
aaggaagatcttgcaaaacggggccacgtttctcaaacgctaattgattttatgaccgaa
aataatgttttagcagggttacctgatgaaaatcaattgagtcttttctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (25)   

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