KEGG   Pediococcus acidilactici: A4V11_04575
Entry
A4V11_04575       CDS       T04512                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
paci  Pediococcus acidilactici
Pathway
paci03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:paci00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A4V11_04575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:paci03021]
    A4V11_04575
   03400 DNA repair and recombination proteins [BR:paci03400]
    A4V11_04575
Enzymes [BR:paci01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A4V11_04575
Transcription machinery [BR:paci03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A4V11_04575
DNA repair and recombination proteins [BR:paci03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A4V11_04575
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AOW74330
UniProt: A0A833UNW5
Position
complement(924625..928266)
AA seq 1213 aa
MIDVNKFESMQIGLASPDKIRMWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDYEC
ACGKYKRIRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVVDPGDTPLEKKQLLTEREYRAKLDEYGNRFVAKIGGEAIQALLQ
SVDLEKEANLLKEELKEASGQKRTRAVRRLDIIEAFIKSGNHPDWMVMDAIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKMNQMGLPVP
MAMELFKPFIMKELVSRNLASNIKNAKRKIDRKDEEVYDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRLHPLACEAYNADFDGDQMAIHVPLSNEAQAEARLLMLAAHHIL
APKDGKPVVTPSQDMVIGNYWLTMERAESVGEGMIFNDLDEVKLALQNGYVSIHTRIGVR
ASSMPEKPFTDQQRQQILITTAGKMLFNDILPKDFVYLNAPTNENLVNGTPDEYFLEAGE
DIHEQLNQRPLLSPFKSGFLSDVIAEVYKQYKVTETSLLLDRMKDLGFYRSTLSGLTVGI
ADITNLPDKPAIIAAAHKKVATVTKQFRRGLITDDERYERVIGIWNDAKDEIQQRLMDTF
DPQNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGKIMELPILSNFREGLSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLLITAIAEGNEMIEPLY
DRILGRYTMKSVINPETGKVIVGQNEMIDERSAQEIIDAGIQEVTIRSAFTCNTAHGVCE
KCYGRNMATGDRVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGNADITQGLPRIQEI
VEARNPKGPAEISEVTGVVESIEEDPAEGTKEVTVKGETDTRTYSLPITARMKVAEGDYI
HRGAPLNEGSIDPKKLIKVRDVLSTENYLLSEIQKVYRMQGIEISDKHVEIMIRQMLRKV
RVMDPGDTDILPGTLMDIDDFKKDNYKTLIAGGIPATSRPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMTDYRQIKPEVVGGNTEQPQTL
SDVEKEMNETIEN
NT seq 3642 nt   +upstreamnt  +downstreamnt
ttgatcgatgttaataaattcgaaagtatgcaaatcggtttagcttcgcctgataagatc
cggatgtggtcgtatggggaagttaagaaaccagaaaccatcaactatcgaactttaaaa
ccagaaaaagatgggttattcgacgaacgcatttttggaccgactaaggattacgaatgt
gcttgtggaaagtacaaacggattcgttataagggaattgtttgtgatcgttgtggtgtt
gaagttactaagtcaaaagttcgtcgcgaacggatgggacatattgaacttgcagcccca
gtaactcacatctggtactttaaaggtattccaagtcggatgggcttagtacttgacatg
agccctcgttcattggaagaaattatttactttgcttcttacgtagttgttgatcctggt
gatactccacttgaaaagaagcaattgttaactgaacgtgaataccgggctaagttagac
gaatacggaaatcgtttcgtagctaagattggtggggaagctatccaagccttgctacaa
agcgtggacctagaaaaagaagctaacttactaaaagaagaattgaaggaagcctctggc
caaaaacggacgcgtgccgtacgtcgtttggacattattgaagccttcatcaagtctggt
aaccatccggattggatggtaatggatgctatcccagttattccgccagatcttcgtcca
atggttcaattggatggtggccgttttgctacttccgacttgaacgatttgtatcggcgg
gtaattaaccggaataaccggttgaaacgcttattagacttgaacgcaccgggaattatc
gtgcaaaacgaaaaacggatgctccaagaagcggtagatgcgttgatcgataatggtcgg
cgtggtcgtccggttgctggtcctggtaaccgtccgttgaagtcactctctcacatgctg
aaaggtaagcaaggacgttttcgtcaaaacttacttggtaagcgggttgactactccgga
cgttcggttattgatgttggtccatcattaaagatgaaccaaatgggtctcccagttcca
atggcaatggaattattcaagccattcattatgaaggaattggttagccggaacttagct
tctaacattaagaacgctaagcggaaaatcgatcgtaaagacgaagaagtttatgacgtt
ttagaagatgttattaaggaacatcccgtgctattgaaccgggcccctactttgcatcga
cttggtattcaagcctttgaaccagtccttgttagtggtaaggcaatgcggcttcaccca
ttagcttgtgaagcttataacgccgactttgatggggaccaaatggcgatccacgttccg
ctatctaacgaagctcaagcagaagcacggctcttaatgcttgctgctcatcacattttg
gcacctaaggatggtaagccagtggttacgccttctcaagatatggttatcggtaactac
tggttaaccatggaacgtgctgaaagcgttggggaaggaatgatctttaacgacctcgac
gaagttaaacttgctttgcaaaatggttacgtatcaattcacacccgaattggggtgcgg
gcaagttcaatgcctgaaaagccatttaccgatcaacaacggcaacaaattttgatcacc
acggctggtaagatgttgttcaacgacattttgccaaaggattttgtttatctaaacgcg
ccaactaacgaaaacttagttaacggtacgccggatgaatacttccttgaagctggtgaa
gatattcatgaacaattgaaccaacgtccgctactttcaccatttaagtctgggttcttg
agtgatgtaattgcggaagtttacaagcaatacaaagttaccgaaacttccttgctcctt
gaccggatgaaggaccttggtttctaccgctccacactttctggattaaccgtggggatt
gcggatattaccaacttgccggacaagcctgcgattattgctgcagcgcataagaaggtc
gcaacggttactaaacaattccgtcgtggtttgattacggatgatgaacgttatgaacgg
gttattggaatttggaacgatgctaaggatgaaattcaacaacggttgatggataccttc
gatccacaaaatccaatcttcatgatgtcggattctggtgctcgtggtaacatctctaac
tttacgcagcttgccggcatgcgtggtttgatggctgcgcctaacggtaagatcatggaa
ttgccaatcttgtcaaacttccgtgaaggacttagtgttttggaaatgtttatttctact
cacggtgctcgtaaaggaatgaccgatacggccttgaagaccgctaactcaggttacttg
actcgtcgtttggttgacgttgcccaagacgttatcgttcgtgaaaaggattgtggtact
gaccgcggtctattgatcactgcgattgcagaaggtaacgaaatgattgaaccactttac
gaccggatccttggtcgttacaccatgaagtcagttatcaatccagaaactggcaaggtg
atcgtgggtcaaaacgaaatgatcgacgaacgtagtgcacaagaaatcattgatgctggt
atccaagaagtaactatccgttccgcatttacatgtaacacggctcacggggtttgtgaa
aagtgttacggccggaacatggctactggggaccgggttgaagttggtgaagcagttggt
acagttgctgctcaatcaatcggtgaaccaggtactcagcttaccatgcgtaacttccat
actggtggggttgctggtaacgccgatattacccaaggtcttccacgtatccaagaaatt
gtggaagctcgtaatcctaagggacctgctgaaatttccgaagttactggggtggttgaa
tccattgaagaagatcctgccgaaggtactaaggaagttaccgttaagggtgaaacagat
acccggacgtatagcttaccaatcactgcccgcatgaaggtagctgaaggtgactacatc
caccgtggtgcaccacttaacgaaggttctatcgatccgaagaagcttatcaaggttcgt
gacgtactttctactgaaaactacttgctcagtgaaatccaaaaggtttaccgtatgcaa
ggtattgaaatcagtgacaagcacgttgaaatcatgattcgtcaaatgcttcggaaagta
cgggttatggatccaggtgacacagatattcttccaggaacgttgatggacatcgacgac
ttcaagaaggataactacaagaccttgatcgctggtggaattccggcaacatctcgtcca
gtaattcttggtattactaaggctgctttggaaactaatagtttcttatccgcggcttcc
ttccaagaaactacccgagtattgacggacgcagctattcgtggtaagaacgatccgttg
gttggtttgaaggaaaatgttattatcggtaagatcattcctgccggtactggaatgaca
gactaccgtcaaattaaaccagaagtggttggtggcaatactgaacaaccacaaacgtta
agcgacgttgaaaaagaaatgaacgaaacaattgaaaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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