KEGG T04512: A4V11

Pediococcus acidilactici: A4V11_05180

Entry

A4V11_05180       CDS       T04512

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

paci Pediococcus acidilactici

Pathway

paci03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:paci00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    A4V11_05180
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:paci03400]
    A4V11_05180
Enzymes [BR:paci01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     A4V11_05180
DNA repair and recombination proteins [BR:paci03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      A4V11_05180

SSDB

Motif

Pfam:

TRCF UvrB_inter DEAD CarD_TRCF_RID Helicase_C ResIII UB2H MFD_D3 CdvA RecG_dom3_C ERCC3_RAD25_C AAA_22 Cytochrom_B562

Other DBs

NCBI-ProteinID:

AOW74431

Position

complement(1044559..1048056)

AA seq 1165 aa
MNIEKIFADTKAVVEVTSNLGAQTRQLVTGLLEPAKQLFLNALLQKQNQPILVVTDSLAH
AERLYNELAEGQLDLQAYWFPAEEIIAAEVATSSPNYRTARVRFLNALANQQRGIYVTSA
SGFRRMVPAAADVKQAQLEISVGEEYDPQQLVQQLVQLGYQRVEQVEKKSEFAVRGSIVD
IFPLNQDVPVRVDFFDVEVDSLRTFDQNNQRSIENITQTKILPATDLIVTEEQFHQGIAK
LQKQVQQARKRLDEDNQELLQQNIAEVTERWQKHQIIPEDVIYTKQLYAKPNSLLDYLAD
GVLVVDDYPRILDAELDIQKNEASWIVDQLKNNVLLDNDPLGLEIRQLIRQKKQPQIFLS
MFQKGMGRLKFDQLTEITTRAVQEFFGQMPVLKGEVERWMSRHATVLIFANSKERQSKIA
STLRDFEIESRTVQADRIVTGAVNIIGQSFSQGFEMPDAKMVVLTEKELFAKVRKKRPRQ
QHIENAERLKSYTELKPGDFVVHVNHGIGKYLGMTTMEVDGVHQDYLTIQYQGSGQLFIP
VTQLNLVQKYVAAEGKRPKINRLGGSDWAKTKQHVASKIEDIADDLIELYAKREAEKGFA
FPPDDDLQLQFENDFPYTETPDQLRSIKEVKEDMEKPRPMDRLLVGDVGYGKTEVALRAA
FKAIEGGKQVAILVPTTILAQQHFDTMNDRFGDYPITTAMLSRFQTNAQIKEALAGLKDG
TIDIVVGTHRLLSKDVQFKDLGLLVIDEEQRFGVKHKERIKALRSQVDVLTLTATPIPRT
LNMSMIGVRDLSVIETPPTNRYPIQTYVVEENAGIIREGIMREIRRDGQVFFLHNRVQDI
EKVVAQIEALVPEARVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANT
LFVENADHMGLSQLYQLRGRIGRSSRVAYAYFLYQRDRVLTELGEKRLEAIKDFTELGSG
FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYSQMLADAVKQKQGKKVPKRSDSEIDLE
IEAFLPSTYIEDSQQKIEFYKRLRQVDSTDGLMDVVDDLIDRFGEYPTEVANLIQITELK
LHADAAQVEKIERKNGNLFITLTPAASQRISGENVFAALSVTKLRATVAESNDKMHIKLV
IQPQMTQQDWFEQLMSYVKKLAEYL

NT seq 3498 nt +upstreamnt +downstreamnt
atgaatattgaaaaaatttttgcagacaccaaggcagttgttgaggttactagcaattta
ggagcgcaaacccgtcaattagtgaccggtttattagaaccggccaaacaactgtttttg
aatgcgttattacagaaacaaaatcaaccaattttagtggtaacggatagcttggcacac
gcggaacgactgtataacgagttagcagaagggcaactggacttacaggcctactggttt
ccggcagaagagattatcgcggcagaggtggcgaccagttcgcccaactaccggacggca
cgggtacgttttttaaacgccctcgctaatcagcaacggggaatttatgttacctctgct
tctggttttcggcgaatggtcccggcggccgcagacgttaagcaggcccagctagaaatt
agcgtgggggaagaatacgacccgcaacagctagttcaacagctagtccaactgggatac
caacgggtcgaacaggtagaaaagaaatcggaatttgccgttcgcggttcaatcgtggat
atttttccgcttaaccaggacgttccagtgcgcgtagacttttttgacgttgaggtagat
tcacttcgaactttcgaccaaaataaccaacgcagtatcgaaaatattacccagactaaa
atcttaccggcgacggatctgattgtgactgaagaacaattccatcaaggaatcgctaag
ttacaaaaacaagttcagcaagcgcgtaaacggctggatgaagataaccaagaactttta
cagcaaaacattgcggaagttacggaacgctggcaaaagcaccagattatcccagaagac
gttatctacactaagcaactctacgcaaagcctaattcgctgctcgattatttagctgac
ggggtgctcgtggttgacgactacccgcggattttggatgcggagttagatattcaaaaa
aatgaggctagttggattgtcgaccagttaaagaacaacgttttgttagacaatgatccg
ttaggcttagaaatccgccaattaatccggcaaaaaaagcagccccaaatctttttatcg
atgtttcagaaggggatgggccggcttaagtttgaccaactaacggaaattactaccaga
gcggtccaggaattctttggccaaatgcccgttttaaagggcgaagtggaacggtggatg
agccggcacgccaccgtcttgatttttgccaattctaaagagcggcaaagtaaaattgcc
agcacgttgcgtgattttgaaatcgaatcacgaaccgtgcaagcagatcggatagttacc
ggggcggtcaacattattgggcaatccttttcacaagggtttgaaatgcccgacgccaaa
atggtggtgcttactgaaaaggaactgtttgccaaagttcgcaaaaagcggccgcgccaa
cagcacattgaaaatgcggaacggttaaaaagttataccgagttaaagcccggagatttt
gtggtgcacgtcaatcacgggattggtaaatacttgggaatgaccaccatggaagttgat
ggagttcaccaagattaccttaccatccaataccagggcagcggacagcttttcattccg
gttacccagcttaatttagttcaaaaatacgtggcggcggaaggcaagcgcccgaagatc
aaccggctgggcggatctgactgggctaagactaagcaacacgttgcttctaaaattgaa
gacattgcggatgatttaattgaactatatgccaaacgggaggccgaaaaggggtttgcc
tttccaccggatgacgatctgcaattacaatttgaaaatgactttccttacaccgaaact
cctgaccaattgcggtccataaaggaagttaaggaagacatggaaaagccccggccaatg
gaccgactgctagttggcgacgtgggttatgggaagaccgaagttgccctgcgagctgct
tttaaggcgattgaaggtggcaagcaggtggcgattctcgtgccgacgacaattttagct
caacaacatttcgacacgatgaacgaccgttttggagattatccaattacgaccgcgatg
ctgtcccgttttcaaactaacgcgcaaattaaggaagctttagcagggttgaaagacggc
accattgacatcgtagtgggcactcaccgactgctatcaaaggacgttcaatttaaggat
ttaggcctgttagtgattgatgaggaacaacgcttcggggtgaaacataaagaacggatt
aaagctttgcgttctcaagtggacgtcctcaccctcactgctaccccaattccccgcacg
ttgaacatgtcaatgattggggtacgcgatctttcagtaattgaaactccgccaaccaac
cgttacccgattcaaacctacgtggttgaagaaaatgccgggattatccgcgaaggaatt
atgcgtgaaatccggcgggacggccaggtattcttcttgcataatcgggtgcaagacatt
gaaaaggtggttgcccaaattgaggcattggttcccgaagcacgggttgcctacattcac
ggtcaaatgaccgaaaaacaattagaagatattttgtttgatttcattgagggtgaatac
gacgtgctggtaacgaccacgattattgaaaccggcatcgacattcccaacgccaatacc
ctatttgtagaaaacgctgatcacatgggcctttcccaactttatcaactgcggggacga
atcgggcgctcctctcgagttgcgtacgcgtacttcctttaccaaagggaccgggtcttg
actgagttgggggaaaaacgtctggaagccattaaagacttcaccgaattgggatccggc
tttaaaatcgctatgcgagacctttcgattcggggtgcgggtaacttacttggtaaacag
caacacgggttcattgattcggttgggtacgacttgtattcgcaaatgctggctgatgca
gttaagcaaaagcagggcaagaaggttcctaaacgttctgatagtgaaattgatttggaa
atcgaagcctttcttccaagtacgtacattgaagactcacagcaaaaaattgaattttac
aaacgactccggcaagttgattccactgatggcttgatggacgtggtggatgatttgatt
gaccggtttggcgaatacccaaccgaagttgccaacttgattcaaattaccgagcttaaa
ttacacgcggatgctgcgcaggtagaaaaaatcgagcggaaaaatggcaacttgttcatt
accttaactccggcggcaagccagcggatcagcggcgaaaacgtctttgccgcgctatcg
gttactaaactgcgagcgacagtggcggaatcaaatgataaaatgcatataaagttagtt
attcaaccacaaatgacgcaacaagattggtttgagcaactaatgagctacgttaaaaaa
ttagctgaatatctgtga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (22)   

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