KEGG   Paenibacillus sp. FSL R5-0345: R50345_23895
Entry
R50345_23895      CDS       T03333                                 
Name
(GenBank) single-stranded DNA exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
paef  Paenibacillus sp. FSL R5-0345
Pathway
paef03410  Base excision repair
paef03430  Mismatch repair
paef03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:paef00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    R50345_23895
   03430 Mismatch repair
    R50345_23895
   03440 Homologous recombination
    R50345_23895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:paef03400]
    R50345_23895
DNA repair and recombination proteins [BR:paef03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     R50345_23895
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     R50345_23895
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      R50345_23895
SSDB
Motif
Pfam: RecJ_OB DHH ssDNA-exonuc_C DHHA1 tRNA_anti-codon DUF4347 DUF2610
Other DBs
NCBI-ProteinID: AIQ37411
Position
complement(5248973..5251375)
AA seq 800 aa
MLYSKTRWQSPAADPDIVRDMARSLSISPLLSSLLVTRGMNTPHEALSFMDGGVEASHDP
FLLKGMAEAVPRIRKALKEEEHILIYGDYDADGVSSTALMIHLLRYLGASFDIYIPHRSN
EGYGLHNHALDWALQQGVSLIITVDTGISAYHQIAYANELGIDVIVTDHHEPPELLPEAY
TLINPKLPDCPYPFKGLAGVGVAYKLAQAMLGEETPEEWQEIAAIGTVADLMPLLDENRE
IVRNGLVSMRNSRFPGIRALLGVSGVSMSTVSAVNIAFGMAPRINASGRLDHAGRAVALL
TTEHADEAEQLAGELDLLNKERQLVVERIVVEATAKLEQIAQGGEIPDIIVLAEQGWNVG
VVGIVASKLLERYYRPVIILDIHPETGMCKGSARSIPGFDIYAALSSCSNLMEHFGGHPA
AAGMSLHQDGLEAFAAALNEYAATVLTPEHFVPVTSADAEVSISDLSLQTALELERLAPF
GMSNPLPKFIIRGATVKETRTMGQEGKHLKIVLQQGKSTIEALAFGKGDLAKLLPAGTTI
NVLAELSINEWNGSRKPQLMLQDLSVQDAQLFDLRGAADAVRQAAHIRELLLPYSGAGPY
RAAAVFQSGRMNPQTELIGMSFWVYDKEDGISAANKDDSIQESGHVSLLCLLDMPETPEQ
LDALLKAFPNADNIALLHSIKDGRERLIIPTRDHFKILYKLLASITAVATPENEVLLRLS
RQSSLSIRMLNKMLDVFEELDFIERSQGSVTFITQPAAKSLTASSHFVRLGQMAEMEQYF
MEGSLSELQDWMLSRRLGVS
NT seq 2403 nt   +upstreamnt  +downstreamnt
ttgctttattcaaaaacaagatggcaatctccggcagccgatcccgacatcgtaagggat
atggcccggagcctttctatttctccgctcttatcctcactattagtgactagaggaatg
aatacgccgcatgaggctctatcgttcatggatggcggtgtggaagcttcgcatgatccg
ttcctcctaaaaggaatggccgaagcggttcccagaattagaaaggctttaaaagaagaa
gaacatattcttatttacggtgactatgacgccgatggtgtgtccagtaccgcattaatg
attcatttgctacgttacttgggtgcttcctttgatatttatatcccgcaccgttcgaat
gagggctacgggctgcataatcatgctttggattgggctctacagcagggtgtatcctta
attattactgtagatactggcattagcgcctatcatcagattgcttacgctaatgaactc
gggatcgatgtgatcgtcacggatcatcatgagccaccagagcttctccctgaggcttac
acgctgattaatccgaagctacccgactgcccatatcccttcaaaggattggcgggtgtg
ggggtagcttataagctggctcaggctatgttaggtgaggaaactcccgaagaatggcag
gaaatagccgctatcggtactgtagcggatttaatgccgcttctagacgagaatcgcgag
attgttcgaaacgggttagtcagtatgcgaaactctcgattccctggtattcgtgcttta
ttaggtgtcagcggggtgagcatgagtaccgtgagtgcggttaatatcgcttttggaatg
gcgcctcgtatcaatgcgagcggccgtctggatcatgctggacgggcagtggctttactt
acaacagagcatgctgatgaggcagagcaactggctggagaacttgatctgctcaataaa
gaacgccaattggttgtagaaagaattgtagtggaggccactgcaaaactggagcagatt
gctcagggcggagaaataccagatatcattgttcttgctgaacaaggttggaatgtgggt
gtggtaggtatagtggcttccaaactgctggagcgttactatcggcctgtgattattctg
gatattcatccagagaccggtatgtgcaaaggctctgcccgctccattcctggctttgat
atatatgcggcgttatcctcttgttctaacttaatggagcatttcggtggtcatccagca
gccgcaggaatgagtctgcatcaggacggcttagaagccttcgctgcggcattaaatgaa
tacgcggctactgtgttgacaccggagcatttcgttcctgttacttctgctgatgcagaa
gtgtcgatatctgatttgtcccttcagaccgcgcttgaattggaaaggcttgcacctttc
gggatgtcaaatcctttgccaaagtttatcattcgcggggctaccgtgaaagagacacga
acaatggggcaagaaggaaaacacttgaagattgtattgcagcaagggaagagtacaatt
gaagccttagcttttggtaaaggagatttggctaagctccttcctgcgggcaccacaatc
aatgtgctggcagaactgtcgatcaacgagtggaatggctcgaggaaaccacaattgatg
ctccaggatttatctgttcaagatgctcagttattcgatctccgtggcgctgctgacgct
gtacggcaagctgcgcatattagagagctgctgctgccttatagcggtgctggtccatat
cgtgctgcagcagtgtttcagagcggtcgtatgaacccacagactgaattgataggaatg
tccttctgggtatatgataaagaagatggcattagcgccgctaataaggatgactcaatt
caggaatcagggcatgtctcattgttatgtctactggatatgccggagacgcctgaacaa
cttgacgcgttactaaaggcttttcctaatgctgataatatcgcactgttgcattctata
aaggatggtcgtgaacgacttatcattccgacacgggatcattttaaaatactttataaa
ctgctggcgtcaatcactgctgttgcaacacctgagaatgaagtgctgctgcggctaagc
cgacaatcatcattaagtattcgaatgcttaataaaatgttagatgtgttcgaggagctt
gattttatcgaaagaagtcagggaagtgtgacctttattacgcagcccgcagctaagagt
cttacagcatcaagtcatttcgttagactggggcagatggcggaaatggagcagtacttc
atggaaggtagcctgtctgagctacaggattggatgttatcacgtcgtttaggcgtatcg
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (13)   

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